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Cluster: Rep_456_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_17 Rep_456_c_17_5 3717 5951 + GH92
TF Rep_456_c_17 Rep_456_c_17_6 6000 6560 + GerE
STP Rep_456_c_17 Rep_456_c_17_7 6592 7602 + FecR
CAZyme Rep_456_c_17 Rep_456_c_17_8 7641 9920 + GH92
TC Rep_456_c_17 Rep_456_c_17_9 10111 13473 + 1.B.14.6.13
TC Rep_456_c_17 Rep_456_c_17_10 13478 15094 + 8.A.46.2.2
pfam Rep_456_c_17 Rep_456_c_17_11 15116 16114 + GH18_BT1044-like
pfam Rep_456_c_17 Rep_456_c_17_12 16123 17289 + BT_3987-like_N | Laminin_G_3
CAZyme Rep_456_c_17 Rep_456_c_17_13 17320 19278 + GH18
CAZyme Rep_456_c_17 Rep_456_c_17_14 19390 21399 + GH97
CAZyme Rep_456_c_17 Rep_456_c_17_15 21425 23698 + GH92
Gene ID: Rep_456_c_17_5
Type: CAZyme
Location: 3717 - 5951 (+)
Gene ID: Rep_456_c_17_6
Type: TF
Location: 6000 - 6560 (+)
Gene ID: Rep_456_c_17_7
Type: STP
Location: 6592 - 7602 (+)
Gene ID: Rep_456_c_17_8
Type: CAZyme
Location: 7641 - 9920 (+)
Gene ID: Rep_456_c_17_9
Type: TC
Location: 10111 - 13473 (+)
Gene ID: Rep_456_c_17_10
Type: TC
Location: 13478 - 15094 (+)
Gene ID: Rep_456_c_17_11
Type: pfam
Location: 15116 - 16114 (+)
Gene ID: Rep_456_c_17_12
Type: pfam
Location: 16123 - 17289 (+)
Gene ID: Rep_456_c_17_13
Type: CAZyme
Location: 17320 - 19278 (+)
Gene ID: Rep_456_c_17_14
Type: CAZyme
Location: 19390 - 21399 (+)
Gene ID: Rep_456_c_17_15
Type: CAZyme
Location: 21425 - 23698 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_17_7 vegan > omnivore 2.20621 0.02809
Rep_456_c_17_7 vegetarian > omnivore 2.31497 0.00065

🧭 Explore Read Mapping of CGC

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