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Cluster: Rep_456_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_14 Rep_456_c_14_55 61345 63762 - 8.A.3.3.4
pfam Rep_456_c_14 Rep_456_c_14_56 63775 64569 - Poly_export | SLBB | SLBB_2
TC Rep_456_c_14 Rep_456_c_14_57 64572 65696 - 9.B.146.1.4
pfam Rep_456_c_14 Rep_456_c_14_58 65742 66278 - NusG
pfam Rep_456_c_14 Rep_456_c_14_59 66783 68009 - Phage_integrase | Phage_int_SAM_5
CAZyme Rep_456_c_14 Rep_456_c_14_60 68434 70500 - GH55_1
Gene ID: Rep_456_c_14_55
Type: TC
Location: 61345 - 63762 (-)
Gene ID: Rep_456_c_14_56
Type: pfam
Location: 63775 - 64569 (-)
Gene ID: Rep_456_c_14_57
Type: TC
Location: 64572 - 65696 (-)
Gene ID: Rep_456_c_14_58
Type: pfam
Location: 65742 - 66278 (-)
Gene ID: Rep_456_c_14_59
Type: pfam
Location: 66783 - 68009 (-)
Gene ID: Rep_456_c_14_60
Type: CAZyme
Location: 68434 - 70500 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_14_55 vegetarian > omnivore 1.06200 0.00065
Rep_456_c_14_56 vegetarian > omnivore 1.96849 0.00065
Rep_456_c_14_56 vegetarian > vegan 1.17768 0.01199
Rep_456_c_14_57 vegan > omnivore 1.07058 0.02809
Rep_456_c_14_57 vegetarian > omnivore 1.98356 0.00065
Rep_456_c_14_58 vegan > omnivore 1.30928 0.02809
Rep_456_c_14_58 vegetarian > omnivore 2.25381 0.00065
Rep_456_c_14_59 vegan > omnivore 1.00795 0.02809
Rep_456_c_14_59 vegetarian > omnivore 1.61998 0.00065

🧭 Explore Read Mapping of CGC

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