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Cluster: Rep_456_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_14 Rep_456_c_14_30 38149 39411 + 2.A.1.7.11
CAZyme Rep_456_c_14 Rep_456_c_14_31 39431 41149 + GH18
CAZyme Rep_456_c_14 Rep_456_c_14_32 41207 42286 - GT4
CAZyme Rep_456_c_14 Rep_456_c_14_33 42399 43490 - GT4
CAZyme Rep_456_c_14 Rep_456_c_14_34 43487 44755 - GT4
NULL(UNKNOWN) Rep_456_c_14 Rep_456_c_14_35 44771 45976 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_456_c_14 Rep_456_c_14_36 45973 46980 - GT4
NULL(UNKNOWN) Rep_456_c_14 Rep_456_c_14_37 46973 47503 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_456_c_14 Rep_456_c_14_38 47760 48782 - Acyl_transf_3
CAZyme Rep_456_c_14 Rep_456_c_14_39 48790 49749 - GT2
Gene ID: Rep_456_c_14_30
Type: TC
Location: 38149 - 39411 (+)
Gene ID: Rep_456_c_14_31
Type: CAZyme
Location: 39431 - 41149 (+)
Gene ID: Rep_456_c_14_32
Type: CAZyme
Location: 41207 - 42286 (-)
Gene ID: Rep_456_c_14_33
Type: CAZyme
Location: 42399 - 43490 (-)
Gene ID: Rep_456_c_14_34
Type: CAZyme
Location: 43487 - 44755 (-)
Gene ID: Rep_456_c_14_35
Type:
Location: 44771 - 45976 (-)
Gene ID: Rep_456_c_14_36
Type: CAZyme
Location: 45973 - 46980 (-)
Gene ID: Rep_456_c_14_37
Type:
Location: 46973 - 47503 (-)
Gene ID: Rep_456_c_14_38
Type: pfam
Location: 47760 - 48782 (-)
Gene ID: Rep_456_c_14_39
Type: CAZyme
Location: 48790 - 49749 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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