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Cluster: Rep_456_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_12 Rep_456_c_12_54 60738 62624 - GH13_46
CAZyme Rep_456_c_12 Rep_456_c_12_55 62718 63824 - GH53
pfam Rep_456_c_12 Rep_456_c_12_56 63921 65393 - SusF_SusE | SusF_N
pfam Rep_456_c_12 Rep_456_c_12_57 65429 66595 - SusE | SusF_SusE
TC Rep_456_c_12 Rep_456_c_12_58 66636 68312 - 8.A.46.1.1
TC Rep_456_c_12 Rep_456_c_12_59 68333 71365 - 1.B.14.6.1
pfam Rep_456_c_12 Rep_456_c_12_60 73029 74579 + PDDEXK_9 | AAA-ATPase_like
CAZyme Rep_456_c_12 Rep_456_c_12_61 74622 77099 - GH2
CAZyme Rep_456_c_12 Rep_456_c_12_62 77136 77675 - GH53
Gene ID: Rep_456_c_12_54
Type: CAZyme
Location: 60738 - 62624 (-)
Gene ID: Rep_456_c_12_55
Type: CAZyme
Location: 62718 - 63824 (-)
Gene ID: Rep_456_c_12_56
Type: pfam
Location: 63921 - 65393 (-)
Gene ID: Rep_456_c_12_57
Type: pfam
Location: 65429 - 66595 (-)
Gene ID: Rep_456_c_12_58
Type: TC
Location: 66636 - 68312 (-)
Gene ID: Rep_456_c_12_59
Type: TC
Location: 68333 - 71365 (-)
Gene ID: Rep_456_c_12_60
Type: pfam
Location: 73029 - 74579 (+)
Gene ID: Rep_456_c_12_61
Type: CAZyme
Location: 74622 - 77099 (-)
Gene ID: Rep_456_c_12_62
Type: CAZyme
Location: 77136 - 77675 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_12_54 vegetarian > omnivore 1.17711 0.00065
Rep_456_c_12_59 vegan > omnivore 1.05259 0.02809

🧭 Explore Read Mapping of CGC

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