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Cluster: Rep_456_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_12 Rep_456_c_12_23 27723 28745 - 2.A.20.1.4
pfam Rep_456_c_12 Rep_456_c_12_24 28760 29419 - PhoU_div
TC Rep_456_c_12 Rep_456_c_12_25 29421 30074 - 9.B.27.2.3
NULL(UNKNOWN) Rep_456_c_12 Rep_456_c_12_26 30221 30634 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_456_c_12 Rep_456_c_12_27 30908 32359 - 3.A.1.131.2
NULL(UNKNOWN) Rep_456_c_12 Rep_456_c_12_28 32552 32749 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_456_c_12 Rep_456_c_12_29 32785 32982 + DoxA
CAZyme Rep_456_c_12 Rep_456_c_12_30 33107 35104 - GH13_14
Gene ID: Rep_456_c_12_23
Type: TC
Location: 27723 - 28745 (-)
Gene ID: Rep_456_c_12_24
Type: pfam
Location: 28760 - 29419 (-)
Gene ID: Rep_456_c_12_25
Type: TC
Location: 29421 - 30074 (-)
Gene ID: Rep_456_c_12_26
Type:
Location: 30221 - 30634 (-)
Gene ID: Rep_456_c_12_27
Type: TC
Location: 30908 - 32359 (-)
Gene ID: Rep_456_c_12_28
Type:
Location: 32552 - 32749 (+)
Gene ID: Rep_456_c_12_29
Type: pfam
Location: 32785 - 32982 (+)
Gene ID: Rep_456_c_12_30
Type: CAZyme
Location: 33107 - 35104 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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