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Cluster: Rep_456_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_11 Rep_456_c_11_105 122802 124100 - GH105
CAZyme Rep_456_c_11 Rep_456_c_11_106 124097 125491 - PL1_2
pfam Rep_456_c_11 Rep_456_c_11_107 125616 127340 - fn3 | DUF5123
TC Rep_456_c_11 Rep_456_c_11_108 127351 129351 - 8.A.46.1.3
TC Rep_456_c_11 Rep_456_c_11_109 129369 132884 - 1.B.14.6.1
Gene ID: Rep_456_c_11_105
Type: CAZyme
Location: 122802 - 124100 (-)
Gene ID: Rep_456_c_11_106
Type: CAZyme
Location: 124097 - 125491 (-)
Gene ID: Rep_456_c_11_107
Type: pfam
Location: 125616 - 127340 (-)
Gene ID: Rep_456_c_11_108
Type: TC
Location: 127351 - 129351 (-)
Gene ID: Rep_456_c_11_109
Type: TC
Location: 129369 - 132884 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_11_105 vegetarian > omnivore 1.92987 0.00065
Rep_456_c_11_106 vegetarian > omnivore 1.76203 0.00065
Rep_456_c_11_107 vegan > omnivore 1.33531 0.02809
Rep_456_c_11_107 vegetarian > omnivore 1.93664 0.00065
Rep_456_c_11_108 vegan > omnivore 1.54786 0.02809
Rep_456_c_11_108 vegetarian > omnivore 2.07112 0.00065
Rep_456_c_11_109 vegan > omnivore 1.36113 0.02809
Rep_456_c_11_109 vegetarian > omnivore 1.18499 0.00065

🧭 Explore Read Mapping of CGC

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