Cluster: Rep_456_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_00023
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_456_c_0 | Rep_456_c_0_126 | 176145 | 177713 | - | GH30_4 |
| CAZyme | Rep_456_c_0 | Rep_456_c_0_127 | 177736 | 180171 | - | GH2 |
| CAZyme | Rep_456_c_0 | Rep_456_c_0_128 | 180181 | 181788 | - | GH30_4 |
| TC | Rep_456_c_0 | Rep_456_c_0_129 | 181896 | 183545 | - | 8.A.46.1.3 |
| TC | Rep_456_c_0 | Rep_456_c_0_130 | 183559 | 186609 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_456_c_0 | Rep_456_c_0_131 | 186633 | 188162 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_456_c_0 | Rep_456_c_0_132 | 188364 | 192401 | + | HTH_AraC |
| CAZyme | Rep_456_c_0 | Rep_456_c_0_133 | 192809 | 194287 | - | GH30_2 |
Gene ID: Rep_456_c_0_126
Type: CAZyme
Location: 176145 - 177713 (-)
Type: CAZyme
Location: 176145 - 177713 (-)
Gene ID: Rep_456_c_0_127
Type: CAZyme
Location: 177736 - 180171 (-)
Type: CAZyme
Location: 177736 - 180171 (-)
Gene ID: Rep_456_c_0_128
Type: CAZyme
Location: 180181 - 181788 (-)
Type: CAZyme
Location: 180181 - 181788 (-)
Gene ID: Rep_456_c_0_129
Type: TC
Location: 181896 - 183545 (-)
Type: TC
Location: 181896 - 183545 (-)
Gene ID: Rep_456_c_0_130
Type: TC
Location: 183559 - 186609 (-)
Type: TC
Location: 183559 - 186609 (-)
Gene ID: Rep_456_c_0_131
Type:
Location: 186633 - 188162 (-)
Type:
Location: 186633 - 188162 (-)
Gene ID: Rep_456_c_0_132
Type: TF
Location: 188364 - 192401 (+)
Type: TF
Location: 188364 - 192401 (+)
Gene ID: Rep_456_c_0_133
Type: CAZyme
Location: 192809 - 194287 (-)
Type: CAZyme
Location: 192809 - 194287 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_0_126 | vegan > omnivore | 1.11767 | 0.02809 |
| Rep_456_c_0_126 | vegetarian > omnivore | 1.51470 | 0.00065 |
| Rep_456_c_0_128 | vegan > omnivore | 1.78641 | 0.02809 |
| Rep_456_c_0_128 | vegetarian > omnivore | 1.19796 | 0.00065 |
| Rep_456_c_0_132 | vegan > omnivore | 1.07509 | 0.02809 |
| Rep_456_c_0_132 | vegetarian > omnivore | 1.11265 | 0.00065 |
| Rep_456_c_0_133 | vegan > omnivore | 2.47098 | 0.01529 |
| Rep_456_c_0_133 | vegetarian > omnivore | 2.88046 | 0.00065 |