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Cluster: Rep_456_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_8 Rep_456_c_8_95 118621 120099 + 3.A.1.105.15
TC Rep_456_c_8 Rep_456_c_8_96 120128 121231 + 3.A.1.105.4
TC Rep_456_c_8 Rep_456_c_8_97 121244 122362 + 3.A.1.105.15
pfam Rep_456_c_8 Rep_456_c_8_98 122363 123607 + Acyl_transf_3
pfam Rep_456_c_8 Rep_456_c_8_99 123699 124124 - HSP20 | ArsA_HSP20
CAZyme Rep_456_c_8 Rep_456_c_8_100 124404 125966 - CBM91 | GH43_12
pfam Rep_456_c_8 Rep_456_c_8_101 125989 126456 - tRNA_SAD
pfam Rep_456_c_8 Rep_456_c_8_102 126863 128161 - HlyD_3
TC Rep_456_c_8 Rep_456_c_8_103 128183 130333 - 3.A.1.112.9
Gene ID: Rep_456_c_8_95
Type: TC
Location: 118621 - 120099 (+)
Gene ID: Rep_456_c_8_96
Type: TC
Location: 120128 - 121231 (+)
Gene ID: Rep_456_c_8_97
Type: TC
Location: 121244 - 122362 (+)
Gene ID: Rep_456_c_8_98
Type: pfam
Location: 122363 - 123607 (+)
Gene ID: Rep_456_c_8_99
Type: pfam
Location: 123699 - 124124 (-)
Gene ID: Rep_456_c_8_100
Type: CAZyme
Location: 124404 - 125966 (-)
Gene ID: Rep_456_c_8_101
Type: pfam
Location: 125989 - 126456 (-)
Gene ID: Rep_456_c_8_102
Type: pfam
Location: 126863 - 128161 (-)
Gene ID: Rep_456_c_8_103
Type: TC
Location: 128183 - 130333 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_8_101 vegetarian > omnivore 1.17804 0.00065
Rep_456_c_8_102 vegetarian > vegan 2.12648 0.01199
Rep_456_c_8_103 vegetarian > vegan 2.69206 0.01199

🧭 Explore Read Mapping of CGC

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