Cluster: Rep_456_CGC22
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_05890
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_456_c_6 | Rep_456_c_6_15 | 12715 | 14769 | + | GH127 |
| pfam | Rep_456_c_6 | Rep_456_c_6_16 | 15015 | 16928 | + | Fib_succ_major | BACON | BACON | BACON_2 |
| TC | Rep_456_c_6 | Rep_456_c_6_17 | 16970 | 20083 | + | 1.B.14.6.2 |
| pfam | Rep_456_c_6 | Rep_456_c_6_18 | 20112 | 21611 | + | SusD-like | SusD-like | SusD-like_2 |
| CAZyme | Rep_456_c_6 | Rep_456_c_6_19 | 21692 | 24421 | + | GH106 |
| CAZyme | Rep_456_c_6 | Rep_456_c_6_20 | 24511 | 27198 | + | GH106 |
| CAZyme | Rep_456_c_6 | Rep_456_c_6_21 | 27215 | 28699 | + | GH28 |
| CAZyme | Rep_456_c_6 | Rep_456_c_6_22 | 28714 | 30255 | + | GH28 |
| CAZyme | Rep_456_c_6 | Rep_456_c_6_23 | 30291 | 32936 | + | GH3 |
| CAZyme | Rep_456_c_6 | Rep_456_c_6_24 | 32950 | 34779 | + | GH127 |
| TF | Rep_456_c_6 | Rep_456_c_6_25 | 34817 | 38785 | + | HTH_AraC |
| CAZyme | Rep_456_c_6 | Rep_456_c_6_26 | 38797 | 40419 | + | CBM91 | GH43_12 |
| pfam | Rep_456_c_6 | Rep_456_c_6_27 | 40519 | 41550 | - | DUF4857 |
| NULL(UNKNOWN) | Rep_456_c_6 | Rep_456_c_6_28 | 41587 | 42255 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_456_c_6 | Rep_456_c_6_29 | 42580 | 43467 | - | 3.A.1.132.8 |
Gene ID: Rep_456_c_6_15
Type: CAZyme
Location: 12715 - 14769 (+)
Type: CAZyme
Location: 12715 - 14769 (+)
Gene ID: Rep_456_c_6_16
Type: pfam
Location: 15015 - 16928 (+)
Type: pfam
Location: 15015 - 16928 (+)
Gene ID: Rep_456_c_6_17
Type: TC
Location: 16970 - 20083 (+)
Type: TC
Location: 16970 - 20083 (+)
Gene ID: Rep_456_c_6_18
Type: pfam
Location: 20112 - 21611 (+)
Type: pfam
Location: 20112 - 21611 (+)
Gene ID: Rep_456_c_6_19
Type: CAZyme
Location: 21692 - 24421 (+)
Type: CAZyme
Location: 21692 - 24421 (+)
Gene ID: Rep_456_c_6_20
Type: CAZyme
Location: 24511 - 27198 (+)
Type: CAZyme
Location: 24511 - 27198 (+)
Gene ID: Rep_456_c_6_21
Type: CAZyme
Location: 27215 - 28699 (+)
Type: CAZyme
Location: 27215 - 28699 (+)
Gene ID: Rep_456_c_6_22
Type: CAZyme
Location: 28714 - 30255 (+)
Type: CAZyme
Location: 28714 - 30255 (+)
Gene ID: Rep_456_c_6_23
Type: CAZyme
Location: 30291 - 32936 (+)
Type: CAZyme
Location: 30291 - 32936 (+)
Gene ID: Rep_456_c_6_24
Type: CAZyme
Location: 32950 - 34779 (+)
Type: CAZyme
Location: 32950 - 34779 (+)
Gene ID: Rep_456_c_6_25
Type: TF
Location: 34817 - 38785 (+)
Type: TF
Location: 34817 - 38785 (+)
Gene ID: Rep_456_c_6_26
Type: CAZyme
Location: 38797 - 40419 (+)
Type: CAZyme
Location: 38797 - 40419 (+)
Gene ID: Rep_456_c_6_27
Type: pfam
Location: 40519 - 41550 (-)
Type: pfam
Location: 40519 - 41550 (-)
Gene ID: Rep_456_c_6_28
Type:
Location: 41587 - 42255 (-)
Type:
Location: 41587 - 42255 (-)
Gene ID: Rep_456_c_6_29
Type: TC
Location: 42580 - 43467 (-)
Type: TC
Location: 42580 - 43467 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_6_27 | vegan > omnivore | 1.60192 | 0.02809 |
| Rep_456_c_6_27 | vegetarian > omnivore | 2.74830 | 0.00065 |
| Rep_456_c_6_27 | vegetarian > vegan | 1.14637 | 0.01199 |
| Rep_456_c_6_28 | vegetarian > omnivore | 2.45365 | 0.00065 |
| Rep_456_c_6_28 | vegetarian > vegan | 1.56505 | 0.01199 |