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Cluster: Rep_456_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_4 Rep_456_c_4_138 147672 150251 - GH115
TC Rep_456_c_4 Rep_456_c_4_139 150614 153760 + 1.B.14.6.1
pfam Rep_456_c_4 Rep_456_c_4_140 153804 155654 + SusD_RagB | SusD-like_3
TC Rep_456_c_4 Rep_456_c_4_141 155687 158512 + 1.B.14.6.1
pfam Rep_456_c_4 Rep_456_c_4_142 158540 160297 + SusD_RagB | SusD-like_3
pfam Rep_456_c_4 Rep_456_c_4_143 160334 161368 + BT_3987-like_N | DUF5627
CAZyme Rep_456_c_4 Rep_456_c_4_144 161403 163616 + GH10
CAZyme Rep_456_c_4 Rep_456_c_4_145 163628 165268 + GH30_8
Gene ID: Rep_456_c_4_138
Type: CAZyme
Location: 147672 - 150251 (-)
Gene ID: Rep_456_c_4_139
Type: TC
Location: 150614 - 153760 (+)
Gene ID: Rep_456_c_4_140
Type: pfam
Location: 153804 - 155654 (+)
Gene ID: Rep_456_c_4_141
Type: TC
Location: 155687 - 158512 (+)
Gene ID: Rep_456_c_4_142
Type: pfam
Location: 158540 - 160297 (+)
Gene ID: Rep_456_c_4_143
Type: pfam
Location: 160334 - 161368 (+)
Gene ID: Rep_456_c_4_144
Type: CAZyme
Location: 161403 - 163616 (+)
Gene ID: Rep_456_c_4_145
Type: CAZyme
Location: 163628 - 165268 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_4_138 vegan > omnivore 1.79749 0.02547
Rep_456_c_4_138 vegetarian > omnivore 1.94365 0.00065
Rep_456_c_4_144 vegan > omnivore 1.90968 0.02809
Rep_456_c_4_144 vegetarian > omnivore 1.69706 0.00065
Rep_456_c_4_145 vegan > omnivore 1.67589 0.02809
Rep_456_c_4_145 vegetarian > omnivore 2.23511 0.00065

🧭 Explore Read Mapping of CGC

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