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Cluster: Rep_456_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_4 Rep_456_c_4_102 95128 97110 - GH51_2
CAZyme Rep_456_c_4 Rep_456_c_4_103 97137 98624 - GH43_4
TF Rep_456_c_4 Rep_456_c_4_104 98745 103070 + HTH_AraC
TC Rep_456_c_4 Rep_456_c_4_105 103467 106661 + 1.B.14.6.1
pfam Rep_456_c_4 Rep_456_c_4_106 106701 108452 + SusD_RagB | SusD-like_3
pfam Rep_456_c_4 Rep_456_c_4_107 108482 110275 + Big_3
CAZyme Rep_456_c_4 Rep_456_c_4_108 110357 112258 + GH43_4
sulfatase Rep_456_c_4 Rep_456_c_4_109 112534 113673 + S1_22
TC Rep_456_c_4 Rep_456_c_4_110 113699 115393 + 2.A.21.3.19
Gene ID: Rep_456_c_4_102
Type: CAZyme
Location: 95128 - 97110 (-)
Gene ID: Rep_456_c_4_103
Type: CAZyme
Location: 97137 - 98624 (-)
Gene ID: Rep_456_c_4_104
Type: TF
Location: 98745 - 103070 (+)
Gene ID: Rep_456_c_4_105
Type: TC
Location: 103467 - 106661 (+)
Gene ID: Rep_456_c_4_106
Type: pfam
Location: 106701 - 108452 (+)
Gene ID: Rep_456_c_4_107
Type: pfam
Location: 108482 - 110275 (+)
Gene ID: Rep_456_c_4_108
Type: CAZyme
Location: 110357 - 112258 (+)
Gene ID: Rep_456_c_4_109
Type: sulfatase
Location: 112534 - 113673 (+)
Gene ID: Rep_456_c_4_110
Type: TC
Location: 113699 - 115393 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_4_106 vegetarian > omnivore 1.17639 0.00065
Rep_456_c_4_106 vegetarian > vegan 1.31966 0.01199

🧭 Explore Read Mapping of CGC

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