Cluster: Rep_456_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_00823
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_456_c_4 | Rep_456_c_4_80 | 58292 | 59845 | - | 2.A.47.4.5 |
| pfam | Rep_456_c_4 | Rep_456_c_4_81 | 59867 | 60685 | - | Inositol_P |
| CAZyme | Rep_456_c_4 | Rep_456_c_4_82 | 60929 | 62536 | - | GH109 |
| CAZyme | Rep_456_c_4 | Rep_456_c_4_83 | 62549 | 65917 | - | GH2 |
| CAZyme | Rep_456_c_4 | Rep_456_c_4_84 | 65997 | 68675 | - | GH2 |
| CAZyme | Rep_456_c_4 | Rep_456_c_4_85 | 68766 | 69989 | - | GH88 |
| pfam | Rep_456_c_4 | Rep_456_c_4_86 | 70115 | 71794 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_456_c_4 | Rep_456_c_4_87 | 71809 | 74583 | - | 1.B.14.6.1 |
| pfam | Rep_456_c_4 | Rep_456_c_4_88 | 74614 | 76479 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_456_c_4 | Rep_456_c_4_89 | 76501 | 79644 | - | 1.B.14.6.1 |
| TF | Rep_456_c_4 | Rep_456_c_4_90 | 80099 | 84043 | - | HTH_AraC |
| CAZyme | Rep_456_c_4 | Rep_456_c_4_91 | 84366 | 85475 | + | GH105 |
| CAZyme | Rep_456_c_4 | Rep_456_c_4_92 | 85508 | 87646 | + | PL8_3 |
Gene ID: Rep_456_c_4_80
Type: TC
Location: 58292 - 59845 (-)
Type: TC
Location: 58292 - 59845 (-)
Gene ID: Rep_456_c_4_81
Type: pfam
Location: 59867 - 60685 (-)
Type: pfam
Location: 59867 - 60685 (-)
Gene ID: Rep_456_c_4_82
Type: CAZyme
Location: 60929 - 62536 (-)
Type: CAZyme
Location: 60929 - 62536 (-)
Gene ID: Rep_456_c_4_83
Type: CAZyme
Location: 62549 - 65917 (-)
Type: CAZyme
Location: 62549 - 65917 (-)
Gene ID: Rep_456_c_4_84
Type: CAZyme
Location: 65997 - 68675 (-)
Type: CAZyme
Location: 65997 - 68675 (-)
Gene ID: Rep_456_c_4_85
Type: CAZyme
Location: 68766 - 69989 (-)
Type: CAZyme
Location: 68766 - 69989 (-)
Gene ID: Rep_456_c_4_86
Type: pfam
Location: 70115 - 71794 (-)
Type: pfam
Location: 70115 - 71794 (-)
Gene ID: Rep_456_c_4_87
Type: TC
Location: 71809 - 74583 (-)
Type: TC
Location: 71809 - 74583 (-)
Gene ID: Rep_456_c_4_88
Type: pfam
Location: 74614 - 76479 (-)
Type: pfam
Location: 74614 - 76479 (-)
Gene ID: Rep_456_c_4_89
Type: TC
Location: 76501 - 79644 (-)
Type: TC
Location: 76501 - 79644 (-)
Gene ID: Rep_456_c_4_90
Type: TF
Location: 80099 - 84043 (-)
Type: TF
Location: 80099 - 84043 (-)
Gene ID: Rep_456_c_4_91
Type: CAZyme
Location: 84366 - 85475 (+)
Type: CAZyme
Location: 84366 - 85475 (+)
Gene ID: Rep_456_c_4_92
Type: CAZyme
Location: 85508 - 87646 (+)
Type: CAZyme
Location: 85508 - 87646 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_4_91 | vegetarian > omnivore | 1.56903 | 0.00065 |
| Rep_456_c_4_91 | vegetarian > vegan | 1.99626 | 0.01199 |