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Cluster: Rep_456_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_3 Rep_456_c_3_119 172793 173608 + GT2
CAZyme Rep_456_c_3 Rep_456_c_3_120 173601 174599 + GT2
pfam Rep_456_c_3 Rep_456_c_3_121 174629 175714 + Glyco_tran_WbsX
CAZyme Rep_456_c_3 Rep_456_c_3_122 175736 176668 + GT2
CAZyme Rep_456_c_3 Rep_456_c_3_123 176671 177948 + GT4
CAZyme Rep_456_c_3 Rep_456_c_3_124 177973 178947 + GT2
CAZyme Rep_456_c_3 Rep_456_c_3_125 178962 179801 - GT2
CAZyme Rep_456_c_3 Rep_456_c_3_126 179804 180916 - GT4
CAZyme Rep_456_c_3 Rep_456_c_3_127 180913 182052 - GT4
CAZyme Rep_456_c_3 Rep_456_c_3_128 182624 183541 + GT8
pfam Rep_456_c_3 Rep_456_c_3_129 183772 184011 - Transposase_mut
TC Rep_456_c_3 Rep_456_c_3_130 184231 185673 - 1.C.39.13.2
Gene ID: Rep_456_c_3_119
Type: CAZyme
Location: 172793 - 173608 (+)
Gene ID: Rep_456_c_3_120
Type: CAZyme
Location: 173601 - 174599 (+)
Gene ID: Rep_456_c_3_121
Type: pfam
Location: 174629 - 175714 (+)
Gene ID: Rep_456_c_3_122
Type: CAZyme
Location: 175736 - 176668 (+)
Gene ID: Rep_456_c_3_123
Type: CAZyme
Location: 176671 - 177948 (+)
Gene ID: Rep_456_c_3_124
Type: CAZyme
Location: 177973 - 178947 (+)
Gene ID: Rep_456_c_3_125
Type: CAZyme
Location: 178962 - 179801 (-)
Gene ID: Rep_456_c_3_126
Type: CAZyme
Location: 179804 - 180916 (-)
Gene ID: Rep_456_c_3_127
Type: CAZyme
Location: 180913 - 182052 (-)
Gene ID: Rep_456_c_3_128
Type: CAZyme
Location: 182624 - 183541 (+)
Gene ID: Rep_456_c_3_129
Type: pfam
Location: 183772 - 184011 (-)
Gene ID: Rep_456_c_3_130
Type: TC
Location: 184231 - 185673 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_3_119 vegan > omnivore 1.12380 0.02809

🧭 Explore Read Mapping of CGC

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