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Cluster: Rep_456_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_3 Rep_456_c_3_78 110314 113400 + PL8_2
sulfatase Rep_456_c_3 Rep_456_c_3_79 113429 114796 + S1_9
pfam Rep_456_c_3 Rep_456_c_3_80 114806 115747 - Dus
CAZyme Rep_456_c_3 Rep_456_c_3_81 115782 116909 - GH117 | GH117
CAZyme Rep_456_c_3 Rep_456_c_3_82 117353 119818 + PL30
pfam Rep_456_c_3 Rep_456_c_3_83 120002 121516 - SusD_RagB | SusD-like_3
TC Rep_456_c_3 Rep_456_c_3_84 121542 124625 - 1.B.14.6.1
CAZyme Rep_456_c_3 Rep_456_c_3_85 124794 127697 - PL8_2
TC Rep_456_c_3 Rep_456_c_3_86 127827 129431 - 8.A.46.1.3
TC Rep_456_c_3 Rep_456_c_3_87 129449 132589 - 1.B.14.6.1
Gene ID: Rep_456_c_3_78
Type: CAZyme
Location: 110314 - 113400 (+)
Gene ID: Rep_456_c_3_79
Type: sulfatase
Location: 113429 - 114796 (+)
Gene ID: Rep_456_c_3_80
Type: pfam
Location: 114806 - 115747 (-)
Gene ID: Rep_456_c_3_81
Type: CAZyme
Location: 115782 - 116909 (-)
Gene ID: Rep_456_c_3_82
Type: CAZyme
Location: 117353 - 119818 (+)
Gene ID: Rep_456_c_3_83
Type: pfam
Location: 120002 - 121516 (-)
Gene ID: Rep_456_c_3_84
Type: TC
Location: 121542 - 124625 (-)
Gene ID: Rep_456_c_3_85
Type: CAZyme
Location: 124794 - 127697 (-)
Gene ID: Rep_456_c_3_86
Type: TC
Location: 127827 - 129431 (-)
Gene ID: Rep_456_c_3_87
Type: TC
Location: 129449 - 132589 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_3_80 vegan > omnivore 1.34067 0.02809
Rep_456_c_3_80 vegetarian > omnivore 2.00806 0.00065
Rep_456_c_3_85 vegetarian > omnivore 1.38553 0.00065

🧭 Explore Read Mapping of CGC

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