Cluster: Rep_456_CGC12
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_00375
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_456_c_3 | Rep_456_c_3_7 | 4179 | 6416 | + | GH92 |
| CAZyme | Rep_456_c_3 | Rep_456_c_3_8 | 6896 | 10465 | - | GH2 |
| CAZyme | Rep_456_c_3 | Rep_456_c_3_9 | 10472 | 11926 | - | GH29 |
| TC | Rep_456_c_3 | Rep_456_c_3_10 | 12274 | 15372 | + | 1.B.14.6.1 |
| pfam | Rep_456_c_3 | Rep_456_c_3_11 | 15385 | 17295 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_456_c_3 | Rep_456_c_3_12 | 17340 | 18653 | + | CBM32 |
| pfam | Rep_456_c_3 | Rep_456_c_3_13 | 18749 | 21379 | - | Kelch_KLHDC2_KLHL20_DRC7 |
| TF | Rep_456_c_3 | Rep_456_c_3_14 | 21510 | 25796 | - | HTH_AraC |
| TC | Rep_456_c_3 | Rep_456_c_3_15 | 25951 | 28992 | + | 1.B.14.6.1 |
| pfam | Rep_456_c_3 | Rep_456_c_3_16 | 29016 | 30896 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_456_c_3 | Rep_456_c_3_17 | 31163 | 32029 | - | EamA | EamA |
| TC | Rep_456_c_3 | Rep_456_c_3_18 | 32110 | 34122 | - | 3.A.18.1.1 |
Gene ID: Rep_456_c_3_7
Type: CAZyme
Location: 4179 - 6416 (+)
Type: CAZyme
Location: 4179 - 6416 (+)
Gene ID: Rep_456_c_3_8
Type: CAZyme
Location: 6896 - 10465 (-)
Type: CAZyme
Location: 6896 - 10465 (-)
Gene ID: Rep_456_c_3_9
Type: CAZyme
Location: 10472 - 11926 (-)
Type: CAZyme
Location: 10472 - 11926 (-)
Gene ID: Rep_456_c_3_10
Type: TC
Location: 12274 - 15372 (+)
Type: TC
Location: 12274 - 15372 (+)
Gene ID: Rep_456_c_3_11
Type: pfam
Location: 15385 - 17295 (+)
Type: pfam
Location: 15385 - 17295 (+)
Gene ID: Rep_456_c_3_12
Type: CAZyme
Location: 17340 - 18653 (+)
Type: CAZyme
Location: 17340 - 18653 (+)
Gene ID: Rep_456_c_3_13
Type: pfam
Location: 18749 - 21379 (-)
Type: pfam
Location: 18749 - 21379 (-)
Gene ID: Rep_456_c_3_14
Type: TF
Location: 21510 - 25796 (-)
Type: TF
Location: 21510 - 25796 (-)
Gene ID: Rep_456_c_3_15
Type: TC
Location: 25951 - 28992 (+)
Type: TC
Location: 25951 - 28992 (+)
Gene ID: Rep_456_c_3_16
Type: pfam
Location: 29016 - 30896 (+)
Type: pfam
Location: 29016 - 30896 (+)
Gene ID: Rep_456_c_3_17
Type: pfam
Location: 31163 - 32029 (-)
Type: pfam
Location: 31163 - 32029 (-)
Gene ID: Rep_456_c_3_18
Type: TC
Location: 32110 - 34122 (-)
Type: TC
Location: 32110 - 34122 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_3_14 | vegetarian > omnivore | 1.51130 | 0.00065 |
| Rep_456_c_3_14 | vegan > omnivore | 1.41411 | 0.02809 |
| Rep_456_c_3_15 | vegetarian > omnivore | 1.22266 | 0.00065 |
| Rep_456_c_3_16 | vegetarian > omnivore | 1.48891 | 0.00065 |
| Rep_456_c_3_16 | vegan > omnivore | 1.47608 | 0.02809 |