Cluster: Rep_456_CGC11
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_02295
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_456_c_2 | Rep_456_c_2_100 | 156062 | 159253 | + | CBM32 |
| pfam | Rep_456_c_2 | Rep_456_c_2_101 | 159579 | 160019 | - | DUF6078 |
| CAZyme | Rep_456_c_2 | Rep_456_c_2_102 | 160224 | 161486 | - | GH88 |
| CAZyme | Rep_456_c_2 | Rep_456_c_2_103 | 161598 | 163634 | - | PL12_2 |
| NULL(UNKNOWN) | Rep_456_c_2 | Rep_456_c_2_104 | 163732 | 164307 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_456_c_2 | Rep_456_c_2_105 | 164320 | 166008 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_456_c_2 | Rep_456_c_2_106 | 166025 | 169150 | - | 1.B.14.6.1 |
| CAZyme | Rep_456_c_2 | Rep_456_c_2_107 | 169196 | 171793 | - | PL15 |
| TF | Rep_456_c_2 | Rep_456_c_2_108 | 171921 | 175961 | - | HTH_AraC |
| sulfatase | Rep_456_c_2 | Rep_456_c_2_109 | 176130 | 177512 | - | S1_9 |
| TC | Rep_456_c_2 | Rep_456_c_2_110 | 177756 | 179969 | + | 3.A.7.7.1 |
| NULL(UNKNOWN) | Rep_456_c_2 | Rep_456_c_2_111 | 179911 | 180030 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_456_c_2 | Rep_456_c_2_112 | 180188 | 182191 | + | 1.B.6.1.1 |
Gene ID: Rep_456_c_2_100
Type: CAZyme
Location: 156062 - 159253 (+)
Type: CAZyme
Location: 156062 - 159253 (+)
Gene ID: Rep_456_c_2_101
Type: pfam
Location: 159579 - 160019 (-)
Type: pfam
Location: 159579 - 160019 (-)
Gene ID: Rep_456_c_2_102
Type: CAZyme
Location: 160224 - 161486 (-)
Type: CAZyme
Location: 160224 - 161486 (-)
Gene ID: Rep_456_c_2_103
Type: CAZyme
Location: 161598 - 163634 (-)
Type: CAZyme
Location: 161598 - 163634 (-)
Gene ID: Rep_456_c_2_104
Type:
Location: 163732 - 164307 (-)
Type:
Location: 163732 - 164307 (-)
Gene ID: Rep_456_c_2_105
Type: pfam
Location: 164320 - 166008 (-)
Type: pfam
Location: 164320 - 166008 (-)
Gene ID: Rep_456_c_2_106
Type: TC
Location: 166025 - 169150 (-)
Type: TC
Location: 166025 - 169150 (-)
Gene ID: Rep_456_c_2_107
Type: CAZyme
Location: 169196 - 171793 (-)
Type: CAZyme
Location: 169196 - 171793 (-)
Gene ID: Rep_456_c_2_108
Type: TF
Location: 171921 - 175961 (-)
Type: TF
Location: 171921 - 175961 (-)
Gene ID: Rep_456_c_2_109
Type: sulfatase
Location: 176130 - 177512 (-)
Type: sulfatase
Location: 176130 - 177512 (-)
Gene ID: Rep_456_c_2_110
Type: TC
Location: 177756 - 179969 (+)
Type: TC
Location: 177756 - 179969 (+)
Gene ID: Rep_456_c_2_111
Type:
Location: 179911 - 180030 (+)
Type:
Location: 179911 - 180030 (+)
Gene ID: Rep_456_c_2_112
Type: TC
Location: 180188 - 182191 (+)
Type: TC
Location: 180188 - 182191 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_2_100 | vegan > omnivore | 1.13334 | 0.02809 |
| Rep_456_c_2_101 | vegetarian > omnivore | 1.50596 | 0.00065 |
| Rep_456_c_2_101 | vegetarian > vegan | 3.42863 | 0.01199 |
| Rep_456_c_2_111 | vegan > omnivore | 2.27091 | 0.02809 |
| Rep_456_c_2_111 | vegetarian > omnivore | 3.00404 | 0.00065 |
| Rep_456_c_2_112 | vegan > omnivore | 2.06764 | 0.02809 |
| Rep_456_c_2_112 | vegetarian > omnivore | 2.08159 | 0.00065 |