Cluster: Rep_456_CGC1
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 6
- Substrate: xylan
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_00239
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_456_c_0 | Rep_456_c_0_1 | 303 | 1460 | + | CE1 |
| NULL(UNKNOWN) | Rep_456_c_0 | Rep_456_c_0_2 | 1489 | 2187 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_456_c_0 | Rep_456_c_0_3 | 2190 | 3641 | + | GH43_7 | GH43_7 |
| TC | Rep_456_c_0 | Rep_456_c_0_4 | 3904 | 7035 | + | 1.B.14.6.1 |
| pfam | Rep_456_c_0 | Rep_456_c_0_5 | 7059 | 8795 | + | SusD_RagB |
| CAZyme | Rep_456_c_0 | Rep_456_c_0_6 | 9259 | 11736 | + | GH9 |
| CAZyme | Rep_456_c_0 | Rep_456_c_0_7 | 11925 | 12983 | + | GH43_17 |
| CAZyme | Rep_456_c_0 | Rep_456_c_0_8 | 13032 | 15632 | + | GH3 |
| CAZyme | Rep_456_c_0 | Rep_456_c_0_9 | 15958 | 17289 | + | CBM6 | GH43_2 |
Gene ID: Rep_456_c_0_1
Type: CAZyme
Location: 303 - 1460 (+)
Type: CAZyme
Location: 303 - 1460 (+)
Gene ID: Rep_456_c_0_2
Type:
Location: 1489 - 2187 (+)
Type:
Location: 1489 - 2187 (+)
Gene ID: Rep_456_c_0_3
Type: CAZyme
Location: 2190 - 3641 (+)
Type: CAZyme
Location: 2190 - 3641 (+)
Gene ID: Rep_456_c_0_4
Type: TC
Location: 3904 - 7035 (+)
Type: TC
Location: 3904 - 7035 (+)
Gene ID: Rep_456_c_0_5
Type: pfam
Location: 7059 - 8795 (+)
Type: pfam
Location: 7059 - 8795 (+)
Gene ID: Rep_456_c_0_6
Type: CAZyme
Location: 9259 - 11736 (+)
Type: CAZyme
Location: 9259 - 11736 (+)
Gene ID: Rep_456_c_0_7
Type: CAZyme
Location: 11925 - 12983 (+)
Type: CAZyme
Location: 11925 - 12983 (+)
Gene ID: Rep_456_c_0_8
Type: CAZyme
Location: 13032 - 15632 (+)
Type: CAZyme
Location: 13032 - 15632 (+)
Gene ID: Rep_456_c_0_9
Type: CAZyme
Location: 15958 - 17289 (+)
Type: CAZyme
Location: 15958 - 17289 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_0_1 | vegetarian > vegan | 1.03957 | 0.01199 |
| Rep_456_c_0_1 | vegetarian > omnivore | 1.39816 | 0.00065 |
| Rep_456_c_0_2 | vegan > omnivore | 1.22855 | 0.02809 |
| Rep_456_c_0_2 | vegetarian > omnivore | 2.21800 | 0.00065 |
| Rep_456_c_0_3 | vegan > omnivore | 1.63729 | 0.02809 |
| Rep_456_c_0_3 | vegetarian > omnivore | 1.73736 | 0.00065 |
| Rep_456_c_0_4 | vegan > omnivore | 1.37736 | 0.02809 |
| Rep_456_c_0_4 | vegetarian > omnivore | 2.31940 | 0.00065 |
| Rep_456_c_0_5 | vegetarian > omnivore | 2.40941 | 0.00065 |
| Rep_456_c_0_5 | vegan > omnivore | 1.89020 | 0.02809 |
| Rep_456_c_0_6 | vegetarian > omnivore | 2.44848 | 0.00065 |
| Rep_456_c_0_6 | vegan > omnivore | 1.92220 | 0.02809 |
| Rep_456_c_0_7 | vegan > omnivore | 1.09622 | 0.02809 |
| Rep_456_c_0_7 | vegetarian > omnivore | 2.16471 | 0.00065 |
| Rep_456_c_0_7 | vegetarian > vegan | 1.06849 | 0.01199 |
| Rep_456_c_0_8 | vegan > omnivore | 1.23129 | 0.02809 |
| Rep_456_c_0_8 | vegetarian > omnivore | 2.30099 | 0.00065 |
| Rep_456_c_0_8 | vegetarian > vegan | 1.06970 | 0.01199 |
| Rep_456_c_0_9 | vegetarian > omnivore | 1.37302 | 0.00065 |
| Rep_456_c_0_9 | vegetarian > vegan | 1.23932 | 0.00450 |