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Cluster: Rep_450_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_450_c_0 Rep_450_c_0_390 464721 465689 + 1.A.34.1.3
TF Rep_450_c_0 Rep_450_c_0_391 465730 466077 + MerR
STP Rep_450_c_0 Rep_450_c_0_392 466177 468444 - HD
CAZyme Rep_450_c_0 Rep_450_c_0_393 468546 469829 - GH23
pfam Rep_450_c_0 Rep_450_c_0_394 469811 470569 - DUF5683
pfam Rep_450_c_0 Rep_450_c_0_395 470624 471520 - ParBc | HTH_ParB | ParB_dimer
TC Rep_450_c_0 Rep_450_c_0_396 471524 472291 - 8.A.3.2.3
pfam Rep_450_c_0 Rep_450_c_0_397 472549 473328 + SurE
CAZyme Rep_450_c_0 Rep_450_c_0_398 473325 474464 + GT19
pfam Rep_450_c_0 Rep_450_c_0_399 474664 475503 - CTP_transf_1
TC Rep_450_c_0 Rep_450_c_0_400 475594 477588 - 3.A.16.1.1
Gene ID: Rep_450_c_0_390
Type: TC
Location: 464721 - 465689 (+)
Gene ID: Rep_450_c_0_391
Type: TF
Location: 465730 - 466077 (+)
Gene ID: Rep_450_c_0_392
Type: STP
Location: 466177 - 468444 (-)
Gene ID: Rep_450_c_0_393
Type: CAZyme
Location: 468546 - 469829 (-)
Gene ID: Rep_450_c_0_394
Type: pfam
Location: 469811 - 470569 (-)
Gene ID: Rep_450_c_0_395
Type: pfam
Location: 470624 - 471520 (-)
Gene ID: Rep_450_c_0_396
Type: TC
Location: 471524 - 472291 (-)
Gene ID: Rep_450_c_0_397
Type: pfam
Location: 472549 - 473328 (+)
Gene ID: Rep_450_c_0_398
Type: CAZyme
Location: 473325 - 474464 (+)
Gene ID: Rep_450_c_0_399
Type: pfam
Location: 474664 - 475503 (-)
Gene ID: Rep_450_c_0_400
Type: TC
Location: 475594 - 477588 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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