Cluster: Rep_450_CGC59
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_450
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_450_c_2 | Rep_450_c_2_228 | 290756 | 290992 | - | 3.D.1.6.4 |
| pfam | Rep_450_c_2 | Rep_450_c_2_229 | 291145 | 291705 | + | Formyl_trans_N |
| CAZyme | Rep_450_c_2 | Rep_450_c_2_230 | 291907 | 294186 | - | GH95 |
| CAZyme | Rep_450_c_2 | Rep_450_c_2_231 | 294710 | 296863 | - | GH89 |
| NULL(UNKNOWN) | Rep_450_c_2 | Rep_450_c_2_232 | 296897 | 300049 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_450_c_2 | Rep_450_c_2_233 | 300063 | 302447 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_450_c_2 | Rep_450_c_2_234 | 302461 | 304038 | - | GH27 |
| NULL(UNKNOWN) | Rep_450_c_2 | Rep_450_c_2_235 | 304100 | 305239 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_450_c_2 | Rep_450_c_2_236 | 305343 | 306836 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_450_c_2 | Rep_450_c_2_237 | 306861 | 310262 | - | 1.B.14.6.1 |
Gene ID: Rep_450_c_2_228
Type: TC
Location: 290756 - 290992 (-)
Type: TC
Location: 290756 - 290992 (-)
Gene ID: Rep_450_c_2_229
Type: pfam
Location: 291145 - 291705 (+)
Type: pfam
Location: 291145 - 291705 (+)
Gene ID: Rep_450_c_2_230
Type: CAZyme
Location: 291907 - 294186 (-)
Type: CAZyme
Location: 291907 - 294186 (-)
Gene ID: Rep_450_c_2_231
Type: CAZyme
Location: 294710 - 296863 (-)
Type: CAZyme
Location: 294710 - 296863 (-)
Gene ID: Rep_450_c_2_232
Type:
Location: 296897 - 300049 (-)
Type:
Location: 296897 - 300049 (-)
Gene ID: Rep_450_c_2_233
Type:
Location: 300063 - 302447 (-)
Type:
Location: 300063 - 302447 (-)
Gene ID: Rep_450_c_2_234
Type: CAZyme
Location: 302461 - 304038 (-)
Type: CAZyme
Location: 302461 - 304038 (-)
Gene ID: Rep_450_c_2_235
Type:
Location: 304100 - 305239 (-)
Type:
Location: 304100 - 305239 (-)
Gene ID: Rep_450_c_2_236
Type: pfam
Location: 305343 - 306836 (-)
Type: pfam
Location: 305343 - 306836 (-)
Gene ID: Rep_450_c_2_237
Type: TC
Location: 306861 - 310262 (-)
Type: TC
Location: 306861 - 310262 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.