Cluster: Rep_450_CGC43
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_450
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_450_c_1 | Rep_450_c_1_251 | 293374 | 294573 | - | 1.B.6.1.14 |
| pfam | Rep_450_c_1 | Rep_450_c_1_252 | 294681 | 295448 | - | H2O2_YaaD |
| pfam | Rep_450_c_1 | Rep_450_c_1_253 | 295536 | 296036 | + | Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_8 |
| CAZyme | Rep_450_c_1 | Rep_450_c_1_254 | 296077 | 297678 | + | GH20 |
| pfam | Rep_450_c_1 | Rep_450_c_1_255 | 297905 | 299158 | - | ABC2_membrane_2 | ABC2_membrane_3 |
| TC | Rep_450_c_1 | Rep_450_c_1_256 | 299171 | 300091 | - | 3.A.1.124.6 |
Gene ID: Rep_450_c_1_251
Type: TC
Location: 293374 - 294573 (-)
Type: TC
Location: 293374 - 294573 (-)
Gene ID: Rep_450_c_1_252
Type: pfam
Location: 294681 - 295448 (-)
Type: pfam
Location: 294681 - 295448 (-)
Gene ID: Rep_450_c_1_253
Type: pfam
Location: 295536 - 296036 (+)
Type: pfam
Location: 295536 - 296036 (+)
Gene ID: Rep_450_c_1_254
Type: CAZyme
Location: 296077 - 297678 (+)
Type: CAZyme
Location: 296077 - 297678 (+)
Gene ID: Rep_450_c_1_255
Type: pfam
Location: 297905 - 299158 (-)
Type: pfam
Location: 297905 - 299158 (-)
Gene ID: Rep_450_c_1_256
Type: TC
Location: 299171 - 300091 (-)
Type: TC
Location: 299171 - 300091 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.