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Cluster: Rep_450_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_450_c_0 Rep_450_c_0_1561 1868055 1868846 - 3.A.1.11.8
TC Rep_450_c_0 Rep_450_c_0_1562 1868840 1869637 - 3.A.1.11.8
TC Rep_450_c_0 Rep_450_c_0_1563 1869655 1871232 - 3.A.1.11.8
STP Rep_450_c_0 Rep_450_c_0_1564 1871184 1873223 - HATPase_c | HisKA
pfam Rep_450_c_0 Rep_450_c_0_1565 1873376 1874497 + Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | Thioredoxin_8 | DUF4369
CAZyme Rep_450_c_0 Rep_450_c_0_1566 1874849 1877413 - GT35
CAZyme Rep_450_c_0 Rep_450_c_0_1567 1877441 1879114 - GT3
TC Rep_450_c_0 Rep_450_c_0_1568 1879369 1879833 - 3.A.2.2.2
TC Rep_450_c_0 Rep_450_c_0_1569 1879863 1881668 - 3.A.2.2.2
pfam Rep_450_c_0 Rep_450_c_0_1570 1881665 1882270 - ATP-synt_D
TC Rep_450_c_0 Rep_450_c_0_1571 1882285 1883607 - 3.A.2.3.3
TC Rep_450_c_0 Rep_450_c_0_1572 1883718 1885472 - 3.A.2.3.3
Gene ID: Rep_450_c_0_1561
Type: TC
Location: 1868055 - 1868846 (-)
Gene ID: Rep_450_c_0_1562
Type: TC
Location: 1868840 - 1869637 (-)
Gene ID: Rep_450_c_0_1563
Type: TC
Location: 1869655 - 1871232 (-)
Gene ID: Rep_450_c_0_1564
Type: STP
Location: 1871184 - 1873223 (-)
Gene ID: Rep_450_c_0_1565
Type: pfam
Location: 1873376 - 1874497 (+)
Gene ID: Rep_450_c_0_1566
Type: CAZyme
Location: 1874849 - 1877413 (-)
Gene ID: Rep_450_c_0_1567
Type: CAZyme
Location: 1877441 - 1879114 (-)
Gene ID: Rep_450_c_0_1568
Type: TC
Location: 1879369 - 1879833 (-)
Gene ID: Rep_450_c_0_1569
Type: TC
Location: 1879863 - 1881668 (-)
Gene ID: Rep_450_c_0_1570
Type: pfam
Location: 1881665 - 1882270 (-)
Gene ID: Rep_450_c_0_1571
Type: TC
Location: 1882285 - 1883607 (-)
Gene ID: Rep_450_c_0_1572
Type: TC
Location: 1883718 - 1885472 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_450_c_0_1563 vegetarian > omnivore 1.17714 0.03116

🧭 Explore Read Mapping of CGC

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