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Cluster: Rep_450_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_450_c_0 Rep_450_c_0_1491 1774234 1775577 + 2.A.66.1.26
TC Rep_450_c_0 Rep_450_c_0_1492 1775627 1776346 + 9.B.186.1.3
CAZyme Rep_450_c_0 Rep_450_c_0_1493 1776426 1777136 + GT51
pfam Rep_450_c_0 Rep_450_c_0_1494 1777144 1777974 - AmiA-like
TC Rep_450_c_0 Rep_450_c_0_1495 1778086 1779861 - 3.B.1.1.6
STP Rep_450_c_0 Rep_450_c_0_1496 1780050 1780553 - Sigma70_r2 | Sigma70_r4_2
TC Rep_450_c_0 Rep_450_c_0_1497 1780718 1781326 - 1.A.62.2.1
pfam Rep_450_c_0 Rep_450_c_0_1498 1781409 1782497 + Epimerase_2
TC Rep_450_c_0 Rep_450_c_0_1499 1782643 1784031 - 9.B.168.1.2
peptidase Rep_450_c_0 Rep_450_c_0_1500 1784293 1785894 + C26.964
TC Rep_450_c_0 Rep_450_c_0_1501 1785933 1787795 + 2.A.9.3.1
Gene ID: Rep_450_c_0_1491
Type: TC
Location: 1774234 - 1775577 (+)
Gene ID: Rep_450_c_0_1492
Type: TC
Location: 1775627 - 1776346 (+)
Gene ID: Rep_450_c_0_1493
Type: CAZyme
Location: 1776426 - 1777136 (+)
Gene ID: Rep_450_c_0_1494
Type: pfam
Location: 1777144 - 1777974 (-)
Gene ID: Rep_450_c_0_1495
Type: TC
Location: 1778086 - 1779861 (-)
Gene ID: Rep_450_c_0_1496
Type: STP
Location: 1780050 - 1780553 (-)
Gene ID: Rep_450_c_0_1497
Type: TC
Location: 1780718 - 1781326 (-)
Gene ID: Rep_450_c_0_1498
Type: pfam
Location: 1781409 - 1782497 (+)
Gene ID: Rep_450_c_0_1499
Type: TC
Location: 1782643 - 1784031 (-)
Gene ID: Rep_450_c_0_1500
Type: peptidase
Location: 1784293 - 1785894 (+)
Gene ID: Rep_450_c_0_1501
Type: TC
Location: 1785933 - 1787795 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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