Cluster: Rep_450_CGC24
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_450
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_450_c_0 | Rep_450_c_0_1433 | 1712046 | 1713008 | + | 3.A.5.1.1 |
| pfam | Rep_450_c_0 | Rep_450_c_0_1434 | 1713009 | 1714307 | + | UPF0004 | Radical_SAM | TRAM_2 |
| pfam | Rep_450_c_0 | Rep_450_c_0_1435 | 1714381 | 1714653 | + | Bac_DNA_binding |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_1436 | 1714685 | 1715980 | + | CBM50 |
Gene ID: Rep_450_c_0_1433
Type: TC
Location: 1712046 - 1713008 (+)
Type: TC
Location: 1712046 - 1713008 (+)
Gene ID: Rep_450_c_0_1434
Type: pfam
Location: 1713009 - 1714307 (+)
Type: pfam
Location: 1713009 - 1714307 (+)
Gene ID: Rep_450_c_0_1435
Type: pfam
Location: 1714381 - 1714653 (+)
Type: pfam
Location: 1714381 - 1714653 (+)
Gene ID: Rep_450_c_0_1436
Type: CAZyme
Location: 1714685 - 1715980 (+)
Type: CAZyme
Location: 1714685 - 1715980 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.