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Cluster: Rep_450_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_450_c_0 Rep_450_c_0_1066 1283872 1285092 - 3.A.1.122.1
TC Rep_450_c_0 Rep_450_c_0_1067 1285135 1285878 - 3.A.1.122.2
TC Rep_450_c_0 Rep_450_c_0_1068 1285914 1287131 - 3.A.1.122.12
TC Rep_450_c_0 Rep_450_c_0_1069 1287168 1288511 - 2.A.6.2.39
pfam Rep_450_c_0 Rep_450_c_0_1070 1288667 1288885 + DUF4492
TC Rep_450_c_0 Rep_450_c_0_1071 1288907 1290412 + 3.D.4.3.2
pfam Rep_450_c_0 Rep_450_c_0_1072 1290459 1291604 + Cyt_bd_oxida_II
CAZyme Rep_450_c_0 Rep_450_c_0_1073 1291981 1294017 + GH2
TC Rep_450_c_0 Rep_450_c_0_1074 1294188 1295840 - 4.C.1.1.7
TF Rep_450_c_0 Rep_450_c_0_1075 1295854 1296429 - HTH_3
pfam Rep_450_c_0 Rep_450_c_0_1076 1296544 1297149 + Lum_binding | Lum_binding
TC Rep_450_c_0 Rep_450_c_0_1077 1297146 1298465 - 9.B.126.2.2
TC Rep_450_c_0 Rep_450_c_0_1078 1299158 1300681 + 9.B.160.1.10
Gene ID: Rep_450_c_0_1066
Type: TC
Location: 1283872 - 1285092 (-)
Gene ID: Rep_450_c_0_1067
Type: TC
Location: 1285135 - 1285878 (-)
Gene ID: Rep_450_c_0_1068
Type: TC
Location: 1285914 - 1287131 (-)
Gene ID: Rep_450_c_0_1069
Type: TC
Location: 1287168 - 1288511 (-)
Gene ID: Rep_450_c_0_1070
Type: pfam
Location: 1288667 - 1288885 (+)
Gene ID: Rep_450_c_0_1071
Type: TC
Location: 1288907 - 1290412 (+)
Gene ID: Rep_450_c_0_1072
Type: pfam
Location: 1290459 - 1291604 (+)
Gene ID: Rep_450_c_0_1073
Type: CAZyme
Location: 1291981 - 1294017 (+)
Gene ID: Rep_450_c_0_1074
Type: TC
Location: 1294188 - 1295840 (-)
Gene ID: Rep_450_c_0_1075
Type: TF
Location: 1295854 - 1296429 (-)
Gene ID: Rep_450_c_0_1076
Type: pfam
Location: 1296544 - 1297149 (+)
Gene ID: Rep_450_c_0_1077
Type: TC
Location: 1297146 - 1298465 (-)
Gene ID: Rep_450_c_0_1078
Type: TC
Location: 1299158 - 1300681 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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