Cluster: Rep_443_CGC7
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_443
- CGC Family ID: CGCFAM_07484
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_443_c_0 | Rep_443_c_0_325 | 446706 | 450005 | - | 1.B.14.6.1 |
| pfam | Rep_443_c_0 | Rep_443_c_0_326 | 450035 | 452593 | - | Fasciclin |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_327 | 452841 | 454916 | - | GH67 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_328 | 454909 | 455880 | - | GH43_1 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_329 | 455930 | 457060 | - | GH10 |
| TC | Rep_443_c_0 | Rep_443_c_0_330 | 457077 | 458606 | - | 2.A.2.3.4 |
| STP | Rep_443_c_0 | Rep_443_c_0_331 | 458815 | 460158 | - | HATPase_c | HisKA |
| TF | Rep_443_c_0 | Rep_443_c_0_332 | 460177 | 460869 | - | Trans_reg_C |
| TC | Rep_443_c_0 | Rep_443_c_0_333 | 460904 | 464029 | - | 2.A.6.1.17 |
| TC | Rep_443_c_0 | Rep_443_c_0_334 | 464045 | 465133 | - | 2.A.6.1.13 |
Gene ID: Rep_443_c_0_325
Type: TC
Location: 446706 - 450005 (-)
Type: TC
Location: 446706 - 450005 (-)
Gene ID: Rep_443_c_0_326
Type: pfam
Location: 450035 - 452593 (-)
Type: pfam
Location: 450035 - 452593 (-)
Gene ID: Rep_443_c_0_327
Type: CAZyme
Location: 452841 - 454916 (-)
Type: CAZyme
Location: 452841 - 454916 (-)
Gene ID: Rep_443_c_0_328
Type: CAZyme
Location: 454909 - 455880 (-)
Type: CAZyme
Location: 454909 - 455880 (-)
Gene ID: Rep_443_c_0_329
Type: CAZyme
Location: 455930 - 457060 (-)
Type: CAZyme
Location: 455930 - 457060 (-)
Gene ID: Rep_443_c_0_330
Type: TC
Location: 457077 - 458606 (-)
Type: TC
Location: 457077 - 458606 (-)
Gene ID: Rep_443_c_0_331
Type: STP
Location: 458815 - 460158 (-)
Type: STP
Location: 458815 - 460158 (-)
Gene ID: Rep_443_c_0_332
Type: TF
Location: 460177 - 460869 (-)
Type: TF
Location: 460177 - 460869 (-)
Gene ID: Rep_443_c_0_333
Type: TC
Location: 460904 - 464029 (-)
Type: TC
Location: 460904 - 464029 (-)
Gene ID: Rep_443_c_0_334
Type: TC
Location: 464045 - 465133 (-)
Type: TC
Location: 464045 - 465133 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Paraprevotella
Species
Paraprevotella clara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_443_c_0_329 | vegetarian > omnivore | 1.00513 | 0.00565 |
| Rep_443_c_0_331 | vegan > omnivore | 1.28056 | 0.00498 |
| Rep_443_c_0_331 | vegetarian > omnivore | 1.43050 | 0.00565 |
| Rep_443_c_0_332 | vegan > omnivore | 1.26838 | 0.00498 |
| Rep_443_c_0_332 | vegetarian > omnivore | 1.43743 | 0.00565 |
| Rep_443_c_0_333 | vegetarian > omnivore | 1.43900 | 0.00565 |
| Rep_443_c_0_334 | vegetarian > omnivore | 1.52634 | 0.00565 |