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Cluster: Rep_443_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_443_c_0 Rep_443_c_0_3086 3932324 3934801 - GH51_2
CAZyme Rep_443_c_0 Rep_443_c_0_3087 3934831 3937950 - GH2
CAZyme Rep_443_c_0 Rep_443_c_0_3088 3937994 3941359 - CBM91 | GH43_19 | GH43_34 | GH43_9
NULL(UNKNOWN) Rep_443_c_0 Rep_443_c_0_3089 3941467 3944709 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_443_c_0 Rep_443_c_0_3090 3944990 3946321 + 2.A.40.4.2
pfam Rep_443_c_0 Rep_443_c_0_3091 3946669 3947823 - DUF6057 | DUF6057
CAZyme Rep_443_c_0 Rep_443_c_0_3092 3947858 3949921 - GH13_8
Gene ID: Rep_443_c_0_3086
Type: CAZyme
Location: 3932324 - 3934801 (-)
Gene ID: Rep_443_c_0_3087
Type: CAZyme
Location: 3934831 - 3937950 (-)
Gene ID: Rep_443_c_0_3088
Type: CAZyme
Location: 3937994 - 3941359 (-)
Gene ID: Rep_443_c_0_3089
Type:
Location: 3941467 - 3944709 (-)
Gene ID: Rep_443_c_0_3090
Type: TC
Location: 3944990 - 3946321 (+)
Gene ID: Rep_443_c_0_3091
Type: pfam
Location: 3946669 - 3947823 (-)
Gene ID: Rep_443_c_0_3092
Type: CAZyme
Location: 3947858 - 3949921 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_443_c_0_3089 vegan > omnivore 1.06741 0.00498
Rep_443_c_0_3090 vegan > omnivore 1.04310 0.00498
Rep_443_c_0_3091 vegan > omnivore 1.09900 0.00498

🧭 Explore Read Mapping of CGC

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