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Cluster: Rep_443_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_443_c_0 Rep_443_c_0_2725 3504860 3506593 + GT83
pfam Rep_443_c_0 Rep_443_c_0_2726 3506603 3506986 + GtrA_DPMS_TM
CAZyme Rep_443_c_0 Rep_443_c_0_2727 3506991 3507944 + GT2
CAZyme Rep_443_c_0 Rep_443_c_0_2728 3508936 3512199 - GH2 | GH43_18
CAZyme Rep_443_c_0 Rep_443_c_0_2729 3512406 3515093 + CBM20 | GH77
TC Rep_443_c_0 Rep_443_c_0_2730 3515123 3516760 + 3.A.1.121.4
Gene ID: Rep_443_c_0_2725
Type: CAZyme
Location: 3504860 - 3506593 (+)
Gene ID: Rep_443_c_0_2726
Type: pfam
Location: 3506603 - 3506986 (+)
Gene ID: Rep_443_c_0_2727
Type: CAZyme
Location: 3506991 - 3507944 (+)
Gene ID: Rep_443_c_0_2728
Type: CAZyme
Location: 3508936 - 3512199 (-)
Gene ID: Rep_443_c_0_2729
Type: CAZyme
Location: 3512406 - 3515093 (+)
Gene ID: Rep_443_c_0_2730
Type: TC
Location: 3515123 - 3516760 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_443_c_0_2725 vegan > omnivore 1.05569 0.00498
Rep_443_c_0_2725 vegetarian > omnivore 1.30346 0.00565
Rep_443_c_0_2726 vegan > omnivore 1.19390 0.00498
Rep_443_c_0_2726 vegetarian > omnivore 1.22860 0.00565
Rep_443_c_0_2727 vegetarian > omnivore 1.19709 0.00565
Rep_443_c_0_2728 vegan > omnivore 1.05759 0.00498
Rep_443_c_0_2728 vegetarian > omnivore 1.21571 0.00565

🧭 Explore Read Mapping of CGC

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