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Cluster: Rep_443_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_443_c_0 Rep_443_c_0_2478 3267438 3268136 + 3.A.1.122.2
pfam Rep_443_c_0 Rep_443_c_0_2479 3268152 3270605 + FtsX | FtsX
pfam Rep_443_c_0 Rep_443_c_0_2480 3270700 3271194 - RNase_T | Rv2179c-like
CAZyme Rep_443_c_0 Rep_443_c_0_2481 3271400 3272389 + GH43_2
CAZyme Rep_443_c_0 Rep_443_c_0_2482 3272457 3273446 + GH43_2
pfam Rep_443_c_0 Rep_443_c_0_2483 3273689 3274417 - ATP_bind_3
TC Rep_443_c_0 Rep_443_c_0_2484 3274438 3274899 - 2.A.7.34.3
Gene ID: Rep_443_c_0_2478
Type: TC
Location: 3267438 - 3268136 (+)
Gene ID: Rep_443_c_0_2479
Type: pfam
Location: 3268152 - 3270605 (+)
Gene ID: Rep_443_c_0_2480
Type: pfam
Location: 3270700 - 3271194 (-)
Gene ID: Rep_443_c_0_2481
Type: CAZyme
Location: 3271400 - 3272389 (+)
Gene ID: Rep_443_c_0_2482
Type: CAZyme
Location: 3272457 - 3273446 (+)
Gene ID: Rep_443_c_0_2483
Type: pfam
Location: 3273689 - 3274417 (-)
Gene ID: Rep_443_c_0_2484
Type: TC
Location: 3274438 - 3274899 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_443_c_0_2479 vegan > omnivore 1.20894 0.00498
Rep_443_c_0_2479 vegetarian > omnivore 1.44254 0.00565
Rep_443_c_0_2480 vegan > omnivore 1.45394 0.00498
Rep_443_c_0_2480 vegetarian > omnivore 1.23495 0.00565
Rep_443_c_0_2482 vegan > omnivore 1.28302 0.00498
Rep_443_c_0_2482 vegetarian > omnivore 1.55937 0.00565
Rep_443_c_0_2483 vegan > omnivore 1.36205 0.00498
Rep_443_c_0_2483 vegetarian > omnivore 1.46099 0.00565

🧭 Explore Read Mapping of CGC

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