Cluster: Rep_443_CGC35
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_443
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_443_c_0 | Rep_443_c_0_1887 | 2528271 | 2529701 | + | 9.A.25.1.1 |
| pfam | Rep_443_c_0 | Rep_443_c_0_1888 | 2529723 | 2530658 | + | GldL_N |
| TC | Rep_443_c_0 | Rep_443_c_0_1889 | 2530706 | 2532247 | + | 9.A.25.1.1 |
| pfam | Rep_443_c_0 | Rep_443_c_0_1890 | 2532291 | 2533358 | + | GldN |
| pfam | Rep_443_c_0 | Rep_443_c_0_1891 | 2533449 | 2534087 | + | OMP_b-brl | OMP_b-brl_2 |
| TC | Rep_443_c_0 | Rep_443_c_0_1892 | 2534203 | 2536680 | + | 3.A.11.3.1 |
| STP | Rep_443_c_0 | Rep_443_c_0_1893 | 2536691 | 2538754 | - | HD |
| pfam | Rep_443_c_0 | Rep_443_c_0_1894 | 2538852 | 2540369 | + | tRNA-synt_1c | Anticodon_2 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1895 | 2540366 | 2541586 | + | GT30 |
Gene ID: Rep_443_c_0_1887
Type: TC
Location: 2528271 - 2529701 (+)
Type: TC
Location: 2528271 - 2529701 (+)
Gene ID: Rep_443_c_0_1888
Type: pfam
Location: 2529723 - 2530658 (+)
Type: pfam
Location: 2529723 - 2530658 (+)
Gene ID: Rep_443_c_0_1889
Type: TC
Location: 2530706 - 2532247 (+)
Type: TC
Location: 2530706 - 2532247 (+)
Gene ID: Rep_443_c_0_1890
Type: pfam
Location: 2532291 - 2533358 (+)
Type: pfam
Location: 2532291 - 2533358 (+)
Gene ID: Rep_443_c_0_1891
Type: pfam
Location: 2533449 - 2534087 (+)
Type: pfam
Location: 2533449 - 2534087 (+)
Gene ID: Rep_443_c_0_1892
Type: TC
Location: 2534203 - 2536680 (+)
Type: TC
Location: 2534203 - 2536680 (+)
Gene ID: Rep_443_c_0_1893
Type: STP
Location: 2536691 - 2538754 (-)
Type: STP
Location: 2536691 - 2538754 (-)
Gene ID: Rep_443_c_0_1894
Type: pfam
Location: 2538852 - 2540369 (+)
Type: pfam
Location: 2538852 - 2540369 (+)
Gene ID: Rep_443_c_0_1895
Type: CAZyme
Location: 2540366 - 2541586 (+)
Type: CAZyme
Location: 2540366 - 2541586 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Paraprevotella
Species
Paraprevotella clara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_443_c_0_1888 | vegan > omnivore | 1.29653 | 0.00498 |
| Rep_443_c_0_1888 | vegetarian > omnivore | 1.27137 | 0.00565 |
| Rep_443_c_0_1889 | vegan > omnivore | 1.08301 | 0.00498 |
| Rep_443_c_0_1889 | vegetarian > omnivore | 1.10157 | 0.00565 |
| Rep_443_c_0_1890 | vegan > omnivore | 1.05637 | 0.00498 |
| Rep_443_c_0_1890 | vegetarian > omnivore | 1.09983 | 0.00565 |
| Rep_443_c_0_1891 | vegan > omnivore | 1.33890 | 0.00498 |
| Rep_443_c_0_1891 | vegetarian > omnivore | 1.09222 | 0.00565 |
| Rep_443_c_0_1892 | vegan > omnivore | 1.05175 | 0.00498 |
| Rep_443_c_0_1893 | vegan > omnivore | 1.04231 | 0.00498 |
| Rep_443_c_0_1893 | vegetarian > omnivore | 1.15453 | 0.00565 |