Cluster: Rep_443_CGC33
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_443
- CGC Family ID: CGCFAM_07489
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_443_c_0 | Rep_443_c_0_1749 | 2343333 | 2346512 | + | 1.B.14.6.1 |
| pfam | Rep_443_c_0 | Rep_443_c_0_1750 | 2346529 | 2348250 | + | SusD_RagB |
| pfam | Rep_443_c_0 | Rep_443_c_0_1751 | 2348292 | 2350649 | + | FG-GAP_3 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1752 | 2350793 | 2353210 | + | GH36 |
| TC | Rep_443_c_0 | Rep_443_c_0_1753 | 2353514 | 2354608 | - | 9.B.97.1.10 |
| pfam | Rep_443_c_0 | Rep_443_c_0_1754 | 2354691 | 2356400 | - | FG-GAP_3 | FG-GAP_3 | FG-GAP_3 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1755 | 2356407 | 2358170 | - | CBM91 | GH43_10 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1756 | 2358270 | 2359061 | - | GT2 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1757 | 2359082 | 2360344 | - | GT4 |
| NULL(UNKNOWN) | Rep_443_c_0 | Rep_443_c_0_1758 | 2360429 | 2361340 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_443_c_0 | Rep_443_c_0_1759 | 2361358 | 2361507 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1760 | 2361523 | 2362590 | - | GT4 |
Gene ID: Rep_443_c_0_1749
Type: TC
Location: 2343333 - 2346512 (+)
Type: TC
Location: 2343333 - 2346512 (+)
Gene ID: Rep_443_c_0_1750
Type: pfam
Location: 2346529 - 2348250 (+)
Type: pfam
Location: 2346529 - 2348250 (+)
Gene ID: Rep_443_c_0_1751
Type: pfam
Location: 2348292 - 2350649 (+)
Type: pfam
Location: 2348292 - 2350649 (+)
Gene ID: Rep_443_c_0_1752
Type: CAZyme
Location: 2350793 - 2353210 (+)
Type: CAZyme
Location: 2350793 - 2353210 (+)
Gene ID: Rep_443_c_0_1753
Type: TC
Location: 2353514 - 2354608 (-)
Type: TC
Location: 2353514 - 2354608 (-)
Gene ID: Rep_443_c_0_1754
Type: pfam
Location: 2354691 - 2356400 (-)
Type: pfam
Location: 2354691 - 2356400 (-)
Gene ID: Rep_443_c_0_1755
Type: CAZyme
Location: 2356407 - 2358170 (-)
Type: CAZyme
Location: 2356407 - 2358170 (-)
Gene ID: Rep_443_c_0_1756
Type: CAZyme
Location: 2358270 - 2359061 (-)
Type: CAZyme
Location: 2358270 - 2359061 (-)
Gene ID: Rep_443_c_0_1757
Type: CAZyme
Location: 2359082 - 2360344 (-)
Type: CAZyme
Location: 2359082 - 2360344 (-)
Gene ID: Rep_443_c_0_1758
Type:
Location: 2360429 - 2361340 (-)
Type:
Location: 2360429 - 2361340 (-)
Gene ID: Rep_443_c_0_1759
Type:
Location: 2361358 - 2361507 (-)
Type:
Location: 2361358 - 2361507 (-)
Gene ID: Rep_443_c_0_1760
Type: CAZyme
Location: 2361523 - 2362590 (-)
Type: CAZyme
Location: 2361523 - 2362590 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Paraprevotella
Species
Paraprevotella clara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_443_c_0_1749 | vegan > omnivore | 1.10104 | 0.00498 |
| Rep_443_c_0_1750 | vegan > omnivore | 1.18446 | 0.00498 |
| Rep_443_c_0_1751 | vegan > omnivore | 1.03786 | 0.00498 |
| Rep_443_c_0_1752 | vegan > omnivore | 1.08846 | 0.00498 |
| Rep_443_c_0_1759 | vegan > omnivore | 1.60808 | 0.00498 |
| Rep_443_c_0_1759 | vegetarian > omnivore | 1.41016 | 0.00565 |