Cluster: Rep_443_CGC32
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_443
- CGC Family ID: CGCFAM_07479
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_443_c_0 | Rep_443_c_0_1719 | 2278836 | 2279783 | - | 2.A.124.1.2 |
| pfam | Rep_443_c_0 | Rep_443_c_0_1720 | 2279859 | 2281475 | + | Acetyltransf_1 | CN_hydrolase |
| pfam | Rep_443_c_0 | Rep_443_c_0_1721 | 2281602 | 2282624 | - | Porin_O_P |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1722 | 2282816 | 2285020 | - | GH36 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1723 | 2285037 | 2287193 | - | GH36 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1724 | 2287228 | 2289219 | - | CE20 | CE20 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1725 | 2289281 | 2292232 | - | CBM32 | GH2 |
| TF | Rep_443_c_0 | Rep_443_c_0_1726 | 2292401 | 2296474 | - | HTH_AraC |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1727 | 2296785 | 2299181 | + | GH95 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1728 | 2299190 | 2301406 | + | GH92 |
| NULL(UNKNOWN) | Rep_443_c_0 | Rep_443_c_0_1729 | 2302439 | 2305060 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_443_c_0 | Rep_443_c_0_1730 | 2305083 | 2308400 | + | 1.B.14.6.1 |
| TC | Rep_443_c_0 | Rep_443_c_0_1731 | 2308420 | 2309982 | + | 8.A.46.1.4 |
| pfam | Rep_443_c_0 | Rep_443_c_0_1732 | 2309988 | 2311859 | + | Fasciclin |
| pfam | Rep_443_c_0 | Rep_443_c_0_1733 | 2311884 | 2313455 | + | Fasciclin |
| TC | Rep_443_c_0 | Rep_443_c_0_1734 | 2313484 | 2316672 | + | 1.B.14.6.1 |
Gene ID: Rep_443_c_0_1719
Type: TC
Location: 2278836 - 2279783 (-)
Type: TC
Location: 2278836 - 2279783 (-)
Gene ID: Rep_443_c_0_1720
Type: pfam
Location: 2279859 - 2281475 (+)
Type: pfam
Location: 2279859 - 2281475 (+)
Gene ID: Rep_443_c_0_1721
Type: pfam
Location: 2281602 - 2282624 (-)
Type: pfam
Location: 2281602 - 2282624 (-)
Gene ID: Rep_443_c_0_1722
Type: CAZyme
Location: 2282816 - 2285020 (-)
Type: CAZyme
Location: 2282816 - 2285020 (-)
Gene ID: Rep_443_c_0_1723
Type: CAZyme
Location: 2285037 - 2287193 (-)
Type: CAZyme
Location: 2285037 - 2287193 (-)
Gene ID: Rep_443_c_0_1724
Type: CAZyme
Location: 2287228 - 2289219 (-)
Type: CAZyme
Location: 2287228 - 2289219 (-)
Gene ID: Rep_443_c_0_1725
Type: CAZyme
Location: 2289281 - 2292232 (-)
Type: CAZyme
Location: 2289281 - 2292232 (-)
Gene ID: Rep_443_c_0_1726
Type: TF
Location: 2292401 - 2296474 (-)
Type: TF
Location: 2292401 - 2296474 (-)
Gene ID: Rep_443_c_0_1727
Type: CAZyme
Location: 2296785 - 2299181 (+)
Type: CAZyme
Location: 2296785 - 2299181 (+)
Gene ID: Rep_443_c_0_1728
Type: CAZyme
Location: 2299190 - 2301406 (+)
Type: CAZyme
Location: 2299190 - 2301406 (+)
Gene ID: Rep_443_c_0_1729
Type:
Location: 2302439 - 2305060 (+)
Type:
Location: 2302439 - 2305060 (+)
Gene ID: Rep_443_c_0_1730
Type: TC
Location: 2305083 - 2308400 (+)
Type: TC
Location: 2305083 - 2308400 (+)
Gene ID: Rep_443_c_0_1731
Type: TC
Location: 2308420 - 2309982 (+)
Type: TC
Location: 2308420 - 2309982 (+)
Gene ID: Rep_443_c_0_1732
Type: pfam
Location: 2309988 - 2311859 (+)
Type: pfam
Location: 2309988 - 2311859 (+)
Gene ID: Rep_443_c_0_1733
Type: pfam
Location: 2311884 - 2313455 (+)
Type: pfam
Location: 2311884 - 2313455 (+)
Gene ID: Rep_443_c_0_1734
Type: TC
Location: 2313484 - 2316672 (+)
Type: TC
Location: 2313484 - 2316672 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Paraprevotella
Species
Paraprevotella clara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_443_c_0_1719 | vegan > omnivore | 1.22982 | 0.00498 |
| Rep_443_c_0_1726 | vegan > omnivore | 1.17860 | 0.00498 |
| Rep_443_c_0_1727 | vegan > omnivore | 1.08720 | 0.00498 |
| Rep_443_c_0_1730 | vegan > omnivore | 1.25249 | 0.00498 |
| Rep_443_c_0_1731 | vegan > omnivore | 1.81997 | 0.00498 |
| Rep_443_c_0_1732 | vegan > omnivore | 1.33533 | 0.00498 |
| Rep_443_c_0_1733 | vegan > omnivore | 1.17321 | 0.00498 |
| Rep_443_c_0_1734 | vegan > omnivore | 1.20034 | 0.00498 |