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Cluster: Rep_443_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_443_c_0 Rep_443_c_0_1665 2198068 2198967 + GT2
CAZyme Rep_443_c_0 Rep_443_c_0_1666 2198980 2200026 - GT2
CAZyme Rep_443_c_0 Rep_443_c_0_1667 2200047 2200943 - GT2
CAZyme Rep_443_c_0 Rep_443_c_0_1668 2200955 2201842 - GT32
CAZyme Rep_443_c_0 Rep_443_c_0_1669 2201874 2202803 - GT8
CAZyme Rep_443_c_0 Rep_443_c_0_1670 2202820 2203830 - GT90
CAZyme Rep_443_c_0 Rep_443_c_0_1671 2204105 2204947 + GT11
CAZyme Rep_443_c_0 Rep_443_c_0_1672 2204957 2205871 + GT2
CAZyme Rep_443_c_0 Rep_443_c_0_1673 2205880 2207793 + GT2 | GT8
CAZyme Rep_443_c_0 Rep_443_c_0_1674 2207818 2208894 + GT2
CAZyme Rep_443_c_0 Rep_443_c_0_1675 2208926 2209894 + GT8
TC Rep_443_c_0 Rep_443_c_0_1676 2210644 2212479 + 3.A.1.106.1
CAZyme Rep_443_c_0 Rep_443_c_0_1677 2212555 2213598 + GT2
CAZyme Rep_443_c_0 Rep_443_c_0_1678 2213611 2214714 + GT2
NULL(UNKNOWN) Rep_443_c_0 Rep_443_c_0_1679 2214850 2215254 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_443_c_0 Rep_443_c_0_1680 2215348 2215989 + 9.B.27.2.3
pfam Rep_443_c_0 Rep_443_c_0_1681 2216009 2216656 + PhoU_div
TC Rep_443_c_0 Rep_443_c_0_1682 2216673 2217689 + 2.A.20.1.4
Gene ID: Rep_443_c_0_1665
Type: CAZyme
Location: 2198068 - 2198967 (+)
Gene ID: Rep_443_c_0_1666
Type: CAZyme
Location: 2198980 - 2200026 (-)
Gene ID: Rep_443_c_0_1667
Type: CAZyme
Location: 2200047 - 2200943 (-)
Gene ID: Rep_443_c_0_1668
Type: CAZyme
Location: 2200955 - 2201842 (-)
Gene ID: Rep_443_c_0_1669
Type: CAZyme
Location: 2201874 - 2202803 (-)
Gene ID: Rep_443_c_0_1670
Type: CAZyme
Location: 2202820 - 2203830 (-)
Gene ID: Rep_443_c_0_1671
Type: CAZyme
Location: 2204105 - 2204947 (+)
Gene ID: Rep_443_c_0_1672
Type: CAZyme
Location: 2204957 - 2205871 (+)
Gene ID: Rep_443_c_0_1673
Type: CAZyme
Location: 2205880 - 2207793 (+)
Gene ID: Rep_443_c_0_1674
Type: CAZyme
Location: 2207818 - 2208894 (+)
Gene ID: Rep_443_c_0_1675
Type: CAZyme
Location: 2208926 - 2209894 (+)
Gene ID: Rep_443_c_0_1676
Type: TC
Location: 2210644 - 2212479 (+)
Gene ID: Rep_443_c_0_1677
Type: CAZyme
Location: 2212555 - 2213598 (+)
Gene ID: Rep_443_c_0_1678
Type: CAZyme
Location: 2213611 - 2214714 (+)
Gene ID: Rep_443_c_0_1679
Type:
Location: 2214850 - 2215254 (+)
Gene ID: Rep_443_c_0_1680
Type: TC
Location: 2215348 - 2215989 (+)
Gene ID: Rep_443_c_0_1681
Type: pfam
Location: 2216009 - 2216656 (+)
Gene ID: Rep_443_c_0_1682
Type: TC
Location: 2216673 - 2217689 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_443_c_0_1666 vegan > omnivore 1.19212 0.00498
Rep_443_c_0_1669 vegan > omnivore 1.05211 0.00498
Rep_443_c_0_1672 vegan > omnivore 4.29412 0.00498
Rep_443_c_0_1672 vegetarian > omnivore 3.48016 0.00565
Rep_443_c_0_1673 vegan > omnivore 15.84555 0.00498
Rep_443_c_0_1673 vegetarian > omnivore 14.76438 0.00565
Rep_443_c_0_1674 vegan > omnivore 15.96762 0.00498
Rep_443_c_0_1674 vegetarian > omnivore 14.89644 0.00565
Rep_443_c_0_1675 vegetarian > omnivore 2.39290 0.00565
Rep_443_c_0_1675 vegan > omnivore 3.12162 0.00498
Rep_443_c_0_1677 vegan > omnivore 1.23111 0.00498
Rep_443_c_0_1679 vegan > omnivore 1.14372 0.00498

🧭 Explore Read Mapping of CGC

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