Cluster: Rep_443_CGC29
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_443
- CGC Family ID: CGCFAM_04935
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1626 | 2147593 | 2149539 | + | GH97 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1627 | 2149562 | 2152084 | + | GH3 |
| NULL(UNKNOWN) | Rep_443_c_0 | Rep_443_c_0_1628 | 2152090 | 2153757 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1629 | 2153804 | 2154952 | + | CE1 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1630 | 2155003 | 2156337 | + | CBM6 | GH43_29 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1631 | 2156719 | 2159160 | + | GH31_4 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1632 | 2159422 | 2160753 | + | CBM6 | GH43_29 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1633 | 2160801 | 2163239 | + | GH31_4 |
| pfam | Rep_443_c_0 | Rep_443_c_0_1634 | 2163745 | 2164722 | - | PAP2 | PAP2_3 |
| pfam | Rep_443_c_0 | Rep_443_c_0_1635 | 2164719 | 2165756 | - | adh_short | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| TC | Rep_443_c_0 | Rep_443_c_0_1636 | 2165777 | 2166694 | - | 2.A.4.7.9 |
Gene ID: Rep_443_c_0_1626
Type: CAZyme
Location: 2147593 - 2149539 (+)
Type: CAZyme
Location: 2147593 - 2149539 (+)
Gene ID: Rep_443_c_0_1627
Type: CAZyme
Location: 2149562 - 2152084 (+)
Type: CAZyme
Location: 2149562 - 2152084 (+)
Gene ID: Rep_443_c_0_1628
Type:
Location: 2152090 - 2153757 (+)
Type:
Location: 2152090 - 2153757 (+)
Gene ID: Rep_443_c_0_1629
Type: CAZyme
Location: 2153804 - 2154952 (+)
Type: CAZyme
Location: 2153804 - 2154952 (+)
Gene ID: Rep_443_c_0_1630
Type: CAZyme
Location: 2155003 - 2156337 (+)
Type: CAZyme
Location: 2155003 - 2156337 (+)
Gene ID: Rep_443_c_0_1631
Type: CAZyme
Location: 2156719 - 2159160 (+)
Type: CAZyme
Location: 2156719 - 2159160 (+)
Gene ID: Rep_443_c_0_1632
Type: CAZyme
Location: 2159422 - 2160753 (+)
Type: CAZyme
Location: 2159422 - 2160753 (+)
Gene ID: Rep_443_c_0_1633
Type: CAZyme
Location: 2160801 - 2163239 (+)
Type: CAZyme
Location: 2160801 - 2163239 (+)
Gene ID: Rep_443_c_0_1634
Type: pfam
Location: 2163745 - 2164722 (-)
Type: pfam
Location: 2163745 - 2164722 (-)
Gene ID: Rep_443_c_0_1635
Type: pfam
Location: 2164719 - 2165756 (-)
Type: pfam
Location: 2164719 - 2165756 (-)
Gene ID: Rep_443_c_0_1636
Type: TC
Location: 2165777 - 2166694 (-)
Type: TC
Location: 2165777 - 2166694 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Paraprevotella
Species
Paraprevotella clara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_443_c_0_1634 | vegan > omnivore | 1.33931 | 0.00498 |