Cluster: Rep_443_CGC24
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_443
- CGC Family ID: CGCFAM_04937
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_443_c_0 | Rep_443_c_0_1263 | 1691900 | 1694281 | - | 1.B.14.6.5 |
| TF | Rep_443_c_0 | Rep_443_c_0_1264 | 1694403 | 1698428 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1265 | 1698584 | 1701052 | + | GH2 |
| NULL(UNKNOWN) | Rep_443_c_0 | Rep_443_c_0_1266 | 1701107 | 1703281 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1267 | 1703355 | 1706891 | + | CBM67 | GH78 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_1268 | 1707168 | 1709975 | + | CBM13 |
| TC | Rep_443_c_0 | Rep_443_c_0_1269 | 1710077 | 1710772 | - | 2.A.122.1.1 |
| TC | Rep_443_c_0 | Rep_443_c_0_1270 | 1710753 | 1711103 | - | 1.E.14.1.13 |
| NULL(UNKNOWN) | Rep_443_c_0 | Rep_443_c_0_1271 | 1711265 | 1711444 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_443_c_0 | Rep_443_c_0_1272 | 1711480 | 1712856 | + | Alk_phosphatase | Alk_phosphatase |
| TC | Rep_443_c_0 | Rep_443_c_0_1273 | 1713089 | 1716358 | + | 1.B.14.6.2 |
Gene ID: Rep_443_c_0_1263
Type: TC
Location: 1691900 - 1694281 (-)
Type: TC
Location: 1691900 - 1694281 (-)
Gene ID: Rep_443_c_0_1264
Type: TF
Location: 1694403 - 1698428 (+)
Type: TF
Location: 1694403 - 1698428 (+)
Gene ID: Rep_443_c_0_1265
Type: CAZyme
Location: 1698584 - 1701052 (+)
Type: CAZyme
Location: 1698584 - 1701052 (+)
Gene ID: Rep_443_c_0_1266
Type:
Location: 1701107 - 1703281 (+)
Type:
Location: 1701107 - 1703281 (+)
Gene ID: Rep_443_c_0_1267
Type: CAZyme
Location: 1703355 - 1706891 (+)
Type: CAZyme
Location: 1703355 - 1706891 (+)
Gene ID: Rep_443_c_0_1268
Type: CAZyme
Location: 1707168 - 1709975 (+)
Type: CAZyme
Location: 1707168 - 1709975 (+)
Gene ID: Rep_443_c_0_1269
Type: TC
Location: 1710077 - 1710772 (-)
Type: TC
Location: 1710077 - 1710772 (-)
Gene ID: Rep_443_c_0_1270
Type: TC
Location: 1710753 - 1711103 (-)
Type: TC
Location: 1710753 - 1711103 (-)
Gene ID: Rep_443_c_0_1271
Type:
Location: 1711265 - 1711444 (+)
Type:
Location: 1711265 - 1711444 (+)
Gene ID: Rep_443_c_0_1272
Type: pfam
Location: 1711480 - 1712856 (+)
Type: pfam
Location: 1711480 - 1712856 (+)
Gene ID: Rep_443_c_0_1273
Type: TC
Location: 1713089 - 1716358 (+)
Type: TC
Location: 1713089 - 1716358 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Paraprevotella
Species
Paraprevotella clara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_443_c_0_1263 | vegetarian > omnivore | 1.31609 | 0.00565 |
| Rep_443_c_0_1264 | vegan > omnivore | 1.17586 | 0.00498 |
| Rep_443_c_0_1264 | vegetarian > omnivore | 1.18228 | 0.00565 |
| Rep_443_c_0_1265 | vegan > omnivore | 1.13876 | 0.00498 |
| Rep_443_c_0_1265 | vegetarian > omnivore | 1.20830 | 0.00565 |
| Rep_443_c_0_1266 | vegetarian > omnivore | 1.04395 | 0.00565 |
| Rep_443_c_0_1267 | vegan > omnivore | 2.57132 | 0.00498 |
| Rep_443_c_0_1267 | vegetarian > omnivore | 4.62478 | 0.00565 |
| Rep_443_c_0_1268 | vegan > omnivore | 1.23231 | 0.00498 |
| Rep_443_c_0_1268 | vegetarian > omnivore | 1.61150 | 0.00565 |