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Cluster: Rep_443_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_443_c_0 Rep_443_c_0_992 1375678 1377765 + 3.A.16.1.1
pfam Rep_443_c_0 Rep_443_c_0_993 1377762 1378613 + CTP_transf_1
CAZyme Rep_443_c_0 Rep_443_c_0_994 1378725 1379900 - GT19
pfam Rep_443_c_0 Rep_443_c_0_995 1379897 1380664 - SurE
TC Rep_443_c_0 Rep_443_c_0_996 1380880 1381644 + 8.A.3.2.3
TF Rep_443_c_0 Rep_443_c_0_997 1381656 1382549 + HTH_3
pfam Rep_443_c_0 Rep_443_c_0_998 1382546 1383385 + DUF5683
CAZyme Rep_443_c_0 Rep_443_c_0_999 1383389 1384675 + GH23
Gene ID: Rep_443_c_0_992
Type: TC
Location: 1375678 - 1377765 (+)
Gene ID: Rep_443_c_0_993
Type: pfam
Location: 1377762 - 1378613 (+)
Gene ID: Rep_443_c_0_994
Type: CAZyme
Location: 1378725 - 1379900 (-)
Gene ID: Rep_443_c_0_995
Type: pfam
Location: 1379897 - 1380664 (-)
Gene ID: Rep_443_c_0_996
Type: TC
Location: 1380880 - 1381644 (+)
Gene ID: Rep_443_c_0_997
Type: TF
Location: 1381656 - 1382549 (+)
Gene ID: Rep_443_c_0_998
Type: pfam
Location: 1382546 - 1383385 (+)
Gene ID: Rep_443_c_0_999
Type: CAZyme
Location: 1383389 - 1384675 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_443_c_0_999 vegetarian > omnivore 1.14144 0.00565

🧭 Explore Read Mapping of CGC

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