Cluster: Rep_443_CGC2
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_443
- CGC Family ID: CGCFAM_01034
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_443_c_0 | Rep_443_c_0_91 | 109422 | 111083 | + | 2.A.81.1.2 |
| pfam | Rep_443_c_0 | Rep_443_c_0_92 | 111093 | 111431 | - | RelE |
| NULL(UNKNOWN) | Rep_443_c_0 | Rep_443_c_0_93 | 111421 | 111669 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_443_c_0 | Rep_443_c_0_94 | 111842 | 113317 | - | 2.A.21.9.1 |
| pfam | Rep_443_c_0 | Rep_443_c_0_95 | 113336 | 114469 | - | KdpD |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_96 | 114479 | 116263 | - | GH15 |
| CAZyme | Rep_443_c_0 | Rep_443_c_0_97 | 116271 | 118502 | - | GT20 |
| pfam | Rep_443_c_0 | Rep_443_c_0_98 | 118692 | 119435 | - | Gcw_chp |
| NULL(UNKNOWN) | Rep_443_c_0 | Rep_443_c_0_99 | 119472 | 119648 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_443_c_0 | Rep_443_c_0_100 | 119665 | 120240 | - | 3.A.3.7.2 |
| TC | Rep_443_c_0 | Rep_443_c_0_101 | 120260 | 122293 | - | 3.A.3.7.1 |
| TC | Rep_443_c_0 | Rep_443_c_0_102 | 122320 | 124026 | - | 3.A.3.7.2 |
Gene ID: Rep_443_c_0_91
Type: TC
Location: 109422 - 111083 (+)
Type: TC
Location: 109422 - 111083 (+)
Gene ID: Rep_443_c_0_92
Type: pfam
Location: 111093 - 111431 (-)
Type: pfam
Location: 111093 - 111431 (-)
Gene ID: Rep_443_c_0_93
Type:
Location: 111421 - 111669 (-)
Type:
Location: 111421 - 111669 (-)
Gene ID: Rep_443_c_0_94
Type: TC
Location: 111842 - 113317 (-)
Type: TC
Location: 111842 - 113317 (-)
Gene ID: Rep_443_c_0_95
Type: pfam
Location: 113336 - 114469 (-)
Type: pfam
Location: 113336 - 114469 (-)
Gene ID: Rep_443_c_0_96
Type: CAZyme
Location: 114479 - 116263 (-)
Type: CAZyme
Location: 114479 - 116263 (-)
Gene ID: Rep_443_c_0_97
Type: CAZyme
Location: 116271 - 118502 (-)
Type: CAZyme
Location: 116271 - 118502 (-)
Gene ID: Rep_443_c_0_98
Type: pfam
Location: 118692 - 119435 (-)
Type: pfam
Location: 118692 - 119435 (-)
Gene ID: Rep_443_c_0_99
Type:
Location: 119472 - 119648 (-)
Type:
Location: 119472 - 119648 (-)
Gene ID: Rep_443_c_0_100
Type: TC
Location: 119665 - 120240 (-)
Type: TC
Location: 119665 - 120240 (-)
Gene ID: Rep_443_c_0_101
Type: TC
Location: 120260 - 122293 (-)
Type: TC
Location: 120260 - 122293 (-)
Gene ID: Rep_443_c_0_102
Type: TC
Location: 122320 - 124026 (-)
Type: TC
Location: 122320 - 124026 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Paraprevotella
Species
Paraprevotella clara
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_443_c_0_91 | vegetarian > omnivore | 1.07902 | 0.00565 |
| Rep_443_c_0_92 | vegan > omnivore | 1.22552 | 0.00498 |
| Rep_443_c_0_93 | vegan > omnivore | 1.81503 | 0.00498 |
| Rep_443_c_0_97 | vegan > omnivore | 1.14585 | 0.00498 |
| Rep_443_c_0_99 | vegan > omnivore | 1.03123 | 0.00498 |
| Rep_443_c_0_100 | vegan > omnivore | 1.03518 | 0.00498 |