dbCAN Logo

Cluster: Rep_439_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_439_c_4 Rep_439_c_4_1223 1497075 1497776 + 1.A.14.2.2
STP Rep_439_c_4 Rep_439_c_4_1224 1497911 1499104 + Aminotran_1_2
pfam Rep_439_c_4 Rep_439_c_4_1225 1499287 1501884 + DUF4953 | DUF5117 | DUF5118
TC Rep_439_c_4 Rep_439_c_4_1226 1501895 1505152 + 1.B.14.6.1
TC Rep_439_c_4 Rep_439_c_4_1227 1505167 1506504 + 8.A.46.1.5
NULL(UNKNOWN) Rep_439_c_4 Rep_439_c_4_1228 1506555 1508213 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_439_c_4 Rep_439_c_4_1229 1508307 1510361 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_439_c_4 Rep_439_c_4_1230 1510396 1512606 - GH20
Gene ID: Rep_439_c_4_1223
Type: TC
Location: 1497075 - 1497776 (+)
Gene ID: Rep_439_c_4_1224
Type: STP
Location: 1497911 - 1499104 (+)
Gene ID: Rep_439_c_4_1225
Type: pfam
Location: 1499287 - 1501884 (+)
Gene ID: Rep_439_c_4_1226
Type: TC
Location: 1501895 - 1505152 (+)
Gene ID: Rep_439_c_4_1227
Type: TC
Location: 1505167 - 1506504 (+)
Gene ID: Rep_439_c_4_1228
Type:
Location: 1506555 - 1508213 (+)
Gene ID: Rep_439_c_4_1229
Type:
Location: 1508307 - 1510361 (-)
Gene ID: Rep_439_c_4_1230
Type: CAZyme
Location: 1510396 - 1512606 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List