Cluster: Rep_426_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_426
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_426_c_0 | Rep_426_c_0_83 | 103611 | 105200 | + | GH28 |
| pfam | Rep_426_c_0 | Rep_426_c_0_84 | 105197 | 105700 | + | RNase_T | Rv2179c-like |
| TC | Rep_426_c_0 | Rep_426_c_0_85 | 105782 | 108256 | + | 1.B.14.6.7 |
| TC | Rep_426_c_0 | Rep_426_c_0_86 | 108228 | 110348 | - | 3.A.11.1.1 |
Gene ID: Rep_426_c_0_83
Type: CAZyme
Location: 103611 - 105200 (+)
Type: CAZyme
Location: 103611 - 105200 (+)
Gene ID: Rep_426_c_0_84
Type: pfam
Location: 105197 - 105700 (+)
Type: pfam
Location: 105197 - 105700 (+)
Gene ID: Rep_426_c_0_85
Type: TC
Location: 105782 - 108256 (+)
Type: TC
Location: 105782 - 108256 (+)
Gene ID: Rep_426_c_0_86
Type: TC
Location: 108228 - 110348 (-)
Type: TC
Location: 108228 - 110348 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA11471
Genus
Caccoplasma
Species
Caccoplasma intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_426_c_0_83 | vegetarian > vegan | 2.03359 | 0.00160 |
| Rep_426_c_0_84 | vegetarian > vegan | 2.81864 | 0.00160 |
| Rep_426_c_0_85 | vegetarian > vegan | 2.78896 | 0.00160 |
| Rep_426_c_0_86 | vegetarian > vegan | 2.37968 | 0.00160 |