Cluster: Rep_419_CGC23
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_419
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_419_c_106 | Rep_419_c_106_1 | 178 | 1461 | - | GH158 |
| CAZyme | Rep_419_c_106 | Rep_419_c_106_2 | 1585 | 5304 | - | GH81 |
| pfam | Rep_419_c_106 | Rep_419_c_106_3 | 5422 | 6714 | - | Por_Secre_tail |
| NULL(UNKNOWN) | Rep_419_c_106 | Rep_419_c_106_4 | 6744 | 8270 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_419_c_106 | Rep_419_c_106_5 | 8383 | 10593 | - | GH3 |
| CAZyme | Rep_419_c_106 | Rep_419_c_106_6 | 10601 | 12259 | - | GH16_3 |
| CAZyme | Rep_419_c_106 | Rep_419_c_106_7 | 12275 | 13819 | - | GH128 |
| CAZyme | Rep_419_c_106 | Rep_419_c_106_8 | 13819 | 14889 | - | GH16_3 |
| pfam | Rep_419_c_106 | Rep_419_c_106_9 | 14947 | 15927 | - | Big_2 |
| TC | Rep_419_c_106 | Rep_419_c_106_10 | 15991 | 17595 | - | 8.A.46.1.3 |
| TC | Rep_419_c_106 | Rep_419_c_106_11 | 17615 | 20764 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_419_c_106 | Rep_419_c_106_12 | 20703 | 20960 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_419_c_106 | Rep_419_c_106_13 | 21165 | 21665 | - | ThrE_2 |
| TC | Rep_419_c_106 | Rep_419_c_106_14 | 21662 | 22441 | - | 2.A.79.2.1 |
| TC | Rep_419_c_106 | Rep_419_c_106_15 | 22788 | 25190 | + | 1.B.14.6.7 |
Gene ID: Rep_419_c_106_1
Type: CAZyme
Location: 178 - 1461 (-)
Type: CAZyme
Location: 178 - 1461 (-)
Gene ID: Rep_419_c_106_2
Type: CAZyme
Location: 1585 - 5304 (-)
Type: CAZyme
Location: 1585 - 5304 (-)
Gene ID: Rep_419_c_106_3
Type: pfam
Location: 5422 - 6714 (-)
Type: pfam
Location: 5422 - 6714 (-)
Gene ID: Rep_419_c_106_4
Type:
Location: 6744 - 8270 (-)
Type:
Location: 6744 - 8270 (-)
Gene ID: Rep_419_c_106_5
Type: CAZyme
Location: 8383 - 10593 (-)
Type: CAZyme
Location: 8383 - 10593 (-)
Gene ID: Rep_419_c_106_6
Type: CAZyme
Location: 10601 - 12259 (-)
Type: CAZyme
Location: 10601 - 12259 (-)
Gene ID: Rep_419_c_106_7
Type: CAZyme
Location: 12275 - 13819 (-)
Type: CAZyme
Location: 12275 - 13819 (-)
Gene ID: Rep_419_c_106_8
Type: CAZyme
Location: 13819 - 14889 (-)
Type: CAZyme
Location: 13819 - 14889 (-)
Gene ID: Rep_419_c_106_9
Type: pfam
Location: 14947 - 15927 (-)
Type: pfam
Location: 14947 - 15927 (-)
Gene ID: Rep_419_c_106_10
Type: TC
Location: 15991 - 17595 (-)
Type: TC
Location: 15991 - 17595 (-)
Gene ID: Rep_419_c_106_11
Type: TC
Location: 17615 - 20764 (-)
Type: TC
Location: 17615 - 20764 (-)
Gene ID: Rep_419_c_106_12
Type:
Location: 20703 - 20960 (-)
Type:
Location: 20703 - 20960 (-)
Gene ID: Rep_419_c_106_13
Type: pfam
Location: 21165 - 21665 (-)
Type: pfam
Location: 21165 - 21665 (-)
Gene ID: Rep_419_c_106_14
Type: TC
Location: 21662 - 22441 (-)
Type: TC
Location: 21662 - 22441 (-)
Gene ID: Rep_419_c_106_15
Type: TC
Location: 22788 - 25190 (+)
Type: TC
Location: 22788 - 25190 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Paludibacteraceae
Genus
Gallipaludibacter
Species
Gallipaludibacter merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.