Cluster: Rep_419_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_419
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_419_c_36 | Rep_419_c_36_14 | 18206 | 19084 | + | 3.A.1.131.1 |
| NULL(UNKNOWN) | Rep_419_c_36 | Rep_419_c_36_15 | 19126 | 19794 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_419_c_36 | Rep_419_c_36_16 | 19826 | 20896 | + | DUF4857 |
| TC | Rep_419_c_36 | Rep_419_c_36_17 | 21105 | 21467 | + | 1.E.14.1.13 |
| TC | Rep_419_c_36 | Rep_419_c_36_18 | 21448 | 22143 | + | 2.A.122.1.1 |
| pfam | Rep_419_c_36 | Rep_419_c_36_19 | 22140 | 22619 | - | tRNA_edit |
| CAZyme | Rep_419_c_36 | Rep_419_c_36_20 | 22623 | 23627 | - | GT2 |
Gene ID: Rep_419_c_36_14
Type: TC
Location: 18206 - 19084 (+)
Type: TC
Location: 18206 - 19084 (+)
Gene ID: Rep_419_c_36_15
Type:
Location: 19126 - 19794 (+)
Type:
Location: 19126 - 19794 (+)
Gene ID: Rep_419_c_36_16
Type: pfam
Location: 19826 - 20896 (+)
Type: pfam
Location: 19826 - 20896 (+)
Gene ID: Rep_419_c_36_17
Type: TC
Location: 21105 - 21467 (+)
Type: TC
Location: 21105 - 21467 (+)
Gene ID: Rep_419_c_36_18
Type: TC
Location: 21448 - 22143 (+)
Type: TC
Location: 21448 - 22143 (+)
Gene ID: Rep_419_c_36_19
Type: pfam
Location: 22140 - 22619 (-)
Type: pfam
Location: 22140 - 22619 (-)
Gene ID: Rep_419_c_36_20
Type: CAZyme
Location: 22623 - 23627 (-)
Type: CAZyme
Location: 22623 - 23627 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Paludibacteraceae
Genus
Gallipaludibacter
Species
Gallipaludibacter merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.