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Cluster: Rep_411_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_411_c_19 Rep_411_c_19_11 17317 18816 + GH28
pfam Rep_411_c_19 Rep_411_c_19_12 18835 21102 + Hepar_II_III_C | DUF4962
CAZyme Rep_411_c_19 Rep_411_c_19_13 21110 22975 + GH97
CAZyme Rep_411_c_19 Rep_411_c_19_14 23128 24786 + GH43_10
CAZyme Rep_411_c_19 Rep_411_c_19_15 24809 26053 + GH88
pfam Rep_411_c_19 Rep_411_c_19_16 26120 27325 + DUF4861
sulfatase Rep_411_c_19 Rep_411_c_19_17 27336 28127 + S1_2
TC Rep_411_c_19 Rep_411_c_19_18 28143 29564 + 4.A.5.1.3
Gene ID: Rep_411_c_19_11
Type: CAZyme
Location: 17317 - 18816 (+)
Gene ID: Rep_411_c_19_12
Type: pfam
Location: 18835 - 21102 (+)
Gene ID: Rep_411_c_19_13
Type: CAZyme
Location: 21110 - 22975 (+)
Gene ID: Rep_411_c_19_14
Type: CAZyme
Location: 23128 - 24786 (+)
Gene ID: Rep_411_c_19_15
Type: CAZyme
Location: 24809 - 26053 (+)
Gene ID: Rep_411_c_19_16
Type: pfam
Location: 26120 - 27325 (+)
Gene ID: Rep_411_c_19_17
Type: sulfatase
Location: 27336 - 28127 (+)
Gene ID: Rep_411_c_19_18
Type: TC
Location: 28143 - 29564 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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