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Cluster: Rep_411_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_411_c_105 Rep_411_c_105_88 71984 73975 + 2.A.67.4.2
TC Rep_411_c_105 Rep_411_c_105_89 74030 75322 + 2.A.66.1.36
pfam Rep_411_c_105 Rep_411_c_105_90 75279 75755 - Radical_SAM | Fer4_12
pfam Rep_411_c_105 Rep_411_c_105_91 75774 77981 - ATP-cone | NRDD
CAZyme Rep_411_c_105 Rep_411_c_105_92 78240 79046 - GT2
NULL(UNKNOWN) Rep_411_c_105 Rep_411_c_105_93 79043 80026 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_411_c_105 Rep_411_c_105_94 80034 80777 - Kdo
CAZyme Rep_411_c_105 Rep_411_c_105_95 80770 81540 - GT2
CAZyme Rep_411_c_105 Rep_411_c_105_96 81738 83435 + GT83
Gene ID: Rep_411_c_105_88
Type: TC
Location: 71984 - 73975 (+)
Gene ID: Rep_411_c_105_89
Type: TC
Location: 74030 - 75322 (+)
Gene ID: Rep_411_c_105_90
Type: pfam
Location: 75279 - 75755 (-)
Gene ID: Rep_411_c_105_91
Type: pfam
Location: 75774 - 77981 (-)
Gene ID: Rep_411_c_105_92
Type: CAZyme
Location: 78240 - 79046 (-)
Gene ID: Rep_411_c_105_93
Type:
Location: 79043 - 80026 (-)
Gene ID: Rep_411_c_105_94
Type: pfam
Location: 80034 - 80777 (-)
Gene ID: Rep_411_c_105_95
Type: CAZyme
Location: 80770 - 81540 (-)
Gene ID: Rep_411_c_105_96
Type: CAZyme
Location: 81738 - 83435 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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