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Cluster: Rep_411_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_411_c_102 Rep_411_c_102_2 4705 7857 + 1.B.14.6.1
pfam Rep_411_c_102 Rep_411_c_102_3 7879 9567 + SusD_RagB | SusD-like_3
pfam Rep_411_c_102 Rep_411_c_102_4 9589 11052 + SGBP_B_XBD
CAZyme Rep_411_c_102 Rep_411_c_102_5 11088 13382 + GH10
NULL(UNKNOWN) Rep_411_c_102 Rep_411_c_102_6 13367 13471 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_411_c_102 Rep_411_c_102_7 13506 15155 + GH35
TC Rep_411_c_102 Rep_411_c_102_8 15248 16666 + 2.A.2.3.2
CAZyme Rep_411_c_102 Rep_411_c_102_9 16669 17769 + GH10
CAZyme Rep_411_c_102 Rep_411_c_102_10 17782 18774 + GH43_1
Gene ID: Rep_411_c_102_2
Type: TC
Location: 4705 - 7857 (+)
Gene ID: Rep_411_c_102_3
Type: pfam
Location: 7879 - 9567 (+)
Gene ID: Rep_411_c_102_4
Type: pfam
Location: 9589 - 11052 (+)
Gene ID: Rep_411_c_102_5
Type: CAZyme
Location: 11088 - 13382 (+)
Gene ID: Rep_411_c_102_6
Type:
Location: 13367 - 13471 (-)
Gene ID: Rep_411_c_102_7
Type: CAZyme
Location: 13506 - 15155 (+)
Gene ID: Rep_411_c_102_8
Type: TC
Location: 15248 - 16666 (+)
Gene ID: Rep_411_c_102_9
Type: CAZyme
Location: 16669 - 17769 (+)
Gene ID: Rep_411_c_102_10
Type: CAZyme
Location: 17782 - 18774 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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