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Cluster: Rep_411_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_411_c_13 Rep_411_c_13_1 190 1932 - GH5_4
NULL(UNKNOWN) Rep_411_c_13 Rep_411_c_13_2 2006 4618 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_411_c_13 Rep_411_c_13_3 4724 6658 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_411_c_13 Rep_411_c_13_4 6716 8404 - 8.A.46.1.2
TC Rep_411_c_13 Rep_411_c_13_5 8438 11617 - 1.B.14.6.1
TF Rep_411_c_13 Rep_411_c_13_6 11987 16114 + HTH_AraC | HTH_AraC
CAZyme Rep_411_c_13 Rep_411_c_13_7 16297 19176 + GH31_4
CAZyme Rep_411_c_13 Rep_411_c_13_8 19176 21704 + GH2
CAZyme Rep_411_c_13 Rep_411_c_13_9 21701 23917 + GH3
Gene ID: Rep_411_c_13_1
Type: CAZyme
Location: 190 - 1932 (-)
Gene ID: Rep_411_c_13_2
Type:
Location: 2006 - 4618 (-)
Gene ID: Rep_411_c_13_3
Type:
Location: 4724 - 6658 (-)
Gene ID: Rep_411_c_13_4
Type: TC
Location: 6716 - 8404 (-)
Gene ID: Rep_411_c_13_5
Type: TC
Location: 8438 - 11617 (-)
Gene ID: Rep_411_c_13_6
Type: TF
Location: 11987 - 16114 (+)
Gene ID: Rep_411_c_13_7
Type: CAZyme
Location: 16297 - 19176 (+)
Gene ID: Rep_411_c_13_8
Type: CAZyme
Location: 19176 - 21704 (+)
Gene ID: Rep_411_c_13_9
Type: CAZyme
Location: 21701 - 23917 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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