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Cluster: Rep_411_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_411_c_88 Rep_411_c_88_30 46368 49370 + 1.B.14.6.1
TC Rep_411_c_88 Rep_411_c_88_31 49386 50939 + 8.A.46.1.1
pfam Rep_411_c_88 Rep_411_c_88_32 50942 52030 + SusE
CAZyme Rep_411_c_88 Rep_411_c_88_33 52051 53124 + GH53
CAZyme Rep_411_c_88 Rep_411_c_88_34 53149 55557 + GH2
TC Rep_411_c_88 Rep_411_c_88_35 55732 56805 + 9.B.114.1.1
pfam Rep_411_c_88 Rep_411_c_88_36 56838 57158 + YjbR
pfam Rep_411_c_88 Rep_411_c_88_37 57305 58618 + CHU_C
CAZyme Rep_411_c_88 Rep_411_c_88_38 58637 59611 + GH23
Gene ID: Rep_411_c_88_30
Type: TC
Location: 46368 - 49370 (+)
Gene ID: Rep_411_c_88_31
Type: TC
Location: 49386 - 50939 (+)
Gene ID: Rep_411_c_88_32
Type: pfam
Location: 50942 - 52030 (+)
Gene ID: Rep_411_c_88_33
Type: CAZyme
Location: 52051 - 53124 (+)
Gene ID: Rep_411_c_88_34
Type: CAZyme
Location: 53149 - 55557 (+)
Gene ID: Rep_411_c_88_35
Type: TC
Location: 55732 - 56805 (+)
Gene ID: Rep_411_c_88_36
Type: pfam
Location: 56838 - 57158 (+)
Gene ID: Rep_411_c_88_37
Type: pfam
Location: 57305 - 58618 (+)
Gene ID: Rep_411_c_88_38
Type: CAZyme
Location: 58637 - 59611 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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