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Cluster: Rep_411_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_411_c_88 Rep_411_c_88_6 5139 6623 - GH30_3
NULL(UNKNOWN) Rep_411_c_88 Rep_411_c_88_7 6620 8092 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_411_c_88 Rep_411_c_88_8 8111 10336 - GH3
CAZyme Rep_411_c_88 Rep_411_c_88_9 10391 13510 - GH3 | GH43_34
CAZyme Rep_411_c_88 Rep_411_c_88_10 13546 15390 - GH127
pfam Rep_411_c_88 Rep_411_c_88_11 15483 16736 - SusF_SusE
CAZyme Rep_411_c_88 Rep_411_c_88_12 16781 18193 - GH27
pfam Rep_411_c_88 Rep_411_c_88_13 18209 20140 - SusF_SusE | SusF_SusE
TC Rep_411_c_88 Rep_411_c_88_14 20166 21896 - 8.A.46.1.1
TC Rep_411_c_88 Rep_411_c_88_15 21917 25144 - 1.B.14.6.1
Gene ID: Rep_411_c_88_6
Type: CAZyme
Location: 5139 - 6623 (-)
Gene ID: Rep_411_c_88_7
Type:
Location: 6620 - 8092 (-)
Gene ID: Rep_411_c_88_8
Type: CAZyme
Location: 8111 - 10336 (-)
Gene ID: Rep_411_c_88_9
Type: CAZyme
Location: 10391 - 13510 (-)
Gene ID: Rep_411_c_88_10
Type: CAZyme
Location: 13546 - 15390 (-)
Gene ID: Rep_411_c_88_11
Type: pfam
Location: 15483 - 16736 (-)
Gene ID: Rep_411_c_88_12
Type: CAZyme
Location: 16781 - 18193 (-)
Gene ID: Rep_411_c_88_13
Type: pfam
Location: 18209 - 20140 (-)
Gene ID: Rep_411_c_88_14
Type: TC
Location: 20166 - 21896 (-)
Gene ID: Rep_411_c_88_15
Type: TC
Location: 21917 - 25144 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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