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Cluster: Rep_411_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_411_c_54 Rep_411_c_54_11 8540 10459 - GH43_4
pfam Rep_411_c_54 Rep_411_c_54_12 10532 12313 - SusD_RagB | SusD-like_3
TC Rep_411_c_54 Rep_411_c_54_13 12327 15563 - 1.B.14.6.1
pfam Rep_411_c_54 Rep_411_c_54_14 15625 17388 - SusD_RagB | SusD-like_3
TC Rep_411_c_54 Rep_411_c_54_15 17398 20523 - 1.B.14.6.1
pfam Rep_411_c_54 Rep_411_c_54_16 20555 22423 - Laminin_G_3
TF Rep_411_c_54 Rep_411_c_54_17 22623 26819 - HTH_AraC | HTH_AraC
CAZyme Rep_411_c_54 Rep_411_c_54_18 27149 28612 + GH43_4
CAZyme Rep_411_c_54 Rep_411_c_54_19 28656 30647 + GH51_2
CAZyme Rep_411_c_54 Rep_411_c_54_20 30660 32198 + GH51_1
Gene ID: Rep_411_c_54_11
Type: CAZyme
Location: 8540 - 10459 (-)
Gene ID: Rep_411_c_54_12
Type: pfam
Location: 10532 - 12313 (-)
Gene ID: Rep_411_c_54_13
Type: TC
Location: 12327 - 15563 (-)
Gene ID: Rep_411_c_54_14
Type: pfam
Location: 15625 - 17388 (-)
Gene ID: Rep_411_c_54_15
Type: TC
Location: 17398 - 20523 (-)
Gene ID: Rep_411_c_54_16
Type: pfam
Location: 20555 - 22423 (-)
Gene ID: Rep_411_c_54_17
Type: TF
Location: 22623 - 26819 (-)
Gene ID: Rep_411_c_54_18
Type: CAZyme
Location: 27149 - 28612 (+)
Gene ID: Rep_411_c_54_19
Type: CAZyme
Location: 28656 - 30647 (+)
Gene ID: Rep_411_c_54_20
Type: CAZyme
Location: 30660 - 32198 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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