Cluster: Rep_408_CGC27
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 19
- Substrate:
- Genome ID: Rep_408
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_408_c_79 | Rep_408_c_79_5 | 4253 | 7423 | - | 1.B.14.6.1 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_6 | 7645 | 9033 | - | PL6_1 |
| pfam | Rep_408_c_79 | Rep_408_c_79_7 | 9069 | 10376 | - | BNR_4 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_8 | 10381 | 11517 | - | GH105 |
| pfam | Rep_408_c_79 | Rep_408_c_79_9 | 11559 | 12623 | - | SGL | SGL |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_10 | 12620 | 14656 | - | PL8_3 |
| NULL(UNKNOWN) | Rep_408_c_79 | Rep_408_c_79_11 | 14752 | 16782 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_12 | 16810 | 18948 | - | GH36 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_13 | 19036 | 21165 | - | GH31_14 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_14 | 21226 | 22596 | - | GH28 |
| pfam | Rep_408_c_79 | Rep_408_c_79_15 | 22643 | 24541 | - | DUF362 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_16 | 24691 | 28746 | - | GH28 | GH28 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_17 | 28736 | 31330 | - | GH95 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_18 | 31320 | 32756 | - | GH29 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_19 | 32780 | 34336 | - | PL29 |
| TC | Rep_408_c_79 | Rep_408_c_79_20 | 34367 | 36262 | - | 1.B.14.10.1 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_21 | 36275 | 37567 | - | GH105 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_22 | 37628 | 38800 | - | PL38 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_23 | 38808 | 41198 | - | GH2 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_24 | 41317 | 42552 | - | GH88 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_25 | 42683 | 44704 | - | GH105 |
| TF | Rep_408_c_79 | Rep_408_c_79_26 | 44865 | 48992 | - | HTH_AraC | HTH_AraC |
| pfam | Rep_408_c_79 | Rep_408_c_79_27 | 49277 | 50518 | + | DUF4861 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_28 | 50501 | 53068 | - | GH2 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_29 | 53163 | 55388 | - | GH3 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_30 | 55385 | 56656 | - | GH5_46 |
| CAZyme | Rep_408_c_79 | Rep_408_c_79_31 | 56801 | 59191 | - | GH88 | PL38 |
Gene ID: Rep_408_c_79_5
Type: TC
Location: 4253 - 7423 (-)
Type: TC
Location: 4253 - 7423 (-)
Gene ID: Rep_408_c_79_6
Type: CAZyme
Location: 7645 - 9033 (-)
Type: CAZyme
Location: 7645 - 9033 (-)
Gene ID: Rep_408_c_79_7
Type: pfam
Location: 9069 - 10376 (-)
Type: pfam
Location: 9069 - 10376 (-)
Gene ID: Rep_408_c_79_8
Type: CAZyme
Location: 10381 - 11517 (-)
Type: CAZyme
Location: 10381 - 11517 (-)
Gene ID: Rep_408_c_79_9
Type: pfam
Location: 11559 - 12623 (-)
Type: pfam
Location: 11559 - 12623 (-)
Gene ID: Rep_408_c_79_10
Type: CAZyme
Location: 12620 - 14656 (-)
Type: CAZyme
Location: 12620 - 14656 (-)
Gene ID: Rep_408_c_79_11
Type:
Location: 14752 - 16782 (-)
Type:
Location: 14752 - 16782 (-)
Gene ID: Rep_408_c_79_12
Type: CAZyme
Location: 16810 - 18948 (-)
Type: CAZyme
Location: 16810 - 18948 (-)
Gene ID: Rep_408_c_79_13
Type: CAZyme
Location: 19036 - 21165 (-)
Type: CAZyme
Location: 19036 - 21165 (-)
Gene ID: Rep_408_c_79_14
Type: CAZyme
Location: 21226 - 22596 (-)
Type: CAZyme
Location: 21226 - 22596 (-)
Gene ID: Rep_408_c_79_15
Type: pfam
Location: 22643 - 24541 (-)
Type: pfam
Location: 22643 - 24541 (-)
Gene ID: Rep_408_c_79_16
Type: CAZyme
Location: 24691 - 28746 (-)
Type: CAZyme
Location: 24691 - 28746 (-)
Gene ID: Rep_408_c_79_17
Type: CAZyme
Location: 28736 - 31330 (-)
Type: CAZyme
Location: 28736 - 31330 (-)
Gene ID: Rep_408_c_79_18
Type: CAZyme
Location: 31320 - 32756 (-)
Type: CAZyme
Location: 31320 - 32756 (-)
Gene ID: Rep_408_c_79_19
Type: CAZyme
Location: 32780 - 34336 (-)
Type: CAZyme
Location: 32780 - 34336 (-)
Gene ID: Rep_408_c_79_20
Type: TC
Location: 34367 - 36262 (-)
Type: TC
Location: 34367 - 36262 (-)
Gene ID: Rep_408_c_79_21
Type: CAZyme
Location: 36275 - 37567 (-)
Type: CAZyme
Location: 36275 - 37567 (-)
Gene ID: Rep_408_c_79_22
Type: CAZyme
Location: 37628 - 38800 (-)
Type: CAZyme
Location: 37628 - 38800 (-)
Gene ID: Rep_408_c_79_23
Type: CAZyme
Location: 38808 - 41198 (-)
Type: CAZyme
Location: 38808 - 41198 (-)
Gene ID: Rep_408_c_79_24
Type: CAZyme
Location: 41317 - 42552 (-)
Type: CAZyme
Location: 41317 - 42552 (-)
Gene ID: Rep_408_c_79_25
Type: CAZyme
Location: 42683 - 44704 (-)
Type: CAZyme
Location: 42683 - 44704 (-)
Gene ID: Rep_408_c_79_26
Type: TF
Location: 44865 - 48992 (-)
Type: TF
Location: 44865 - 48992 (-)
Gene ID: Rep_408_c_79_27
Type: pfam
Location: 49277 - 50518 (+)
Type: pfam
Location: 49277 - 50518 (+)
Gene ID: Rep_408_c_79_28
Type: CAZyme
Location: 50501 - 53068 (-)
Type: CAZyme
Location: 50501 - 53068 (-)
Gene ID: Rep_408_c_79_29
Type: CAZyme
Location: 53163 - 55388 (-)
Type: CAZyme
Location: 53163 - 55388 (-)
Gene ID: Rep_408_c_79_30
Type: CAZyme
Location: 55385 - 56656 (-)
Type: CAZyme
Location: 55385 - 56656 (-)
Gene ID: Rep_408_c_79_31
Type: CAZyme
Location: 56801 - 59191 (-)
Type: CAZyme
Location: 56801 - 59191 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Duncaniella
Species
Duncaniella sp019416285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.