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Cluster: Rep_3486_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3486_c_8 Rep_3486_c_8_25 22062 22712 + 2.A.115.2.8
TC Rep_3486_c_8 Rep_3486_c_8_26 23656 24897 - 3.A.1.103.6
pfam Rep_3486_c_8 Rep_3486_c_8_27 24911 25666 - ABC2_membrane
pfam Rep_3486_c_8 Rep_3486_c_8_28 25746 26870 - Glyphos_transf
CAZyme Rep_3486_c_8 Rep_3486_c_8_29 26874 27713 - GT2
peptidase Rep_3486_c_8 Rep_3486_c_8_30 27964 28707 - C26.UNW
pfam Rep_3486_c_8 Rep_3486_c_8_31 28697 30043 - Mur_ligase_M | MurT_C
TC Rep_3486_c_8 Rep_3486_c_8_32 30398 31753 + 2.A.38.4.1
TC Rep_3486_c_8 Rep_3486_c_8_33 31792 32436 + 2.A.38.4.4
Gene ID: Rep_3486_c_8_25
Type: TC
Location: 22062 - 22712 (+)
Gene ID: Rep_3486_c_8_26
Type: TC
Location: 23656 - 24897 (-)
Gene ID: Rep_3486_c_8_27
Type: pfam
Location: 24911 - 25666 (-)
Gene ID: Rep_3486_c_8_28
Type: pfam
Location: 25746 - 26870 (-)
Gene ID: Rep_3486_c_8_29
Type: CAZyme
Location: 26874 - 27713 (-)
Gene ID: Rep_3486_c_8_30
Type: peptidase
Location: 27964 - 28707 (-)
Gene ID: Rep_3486_c_8_31
Type: pfam
Location: 28697 - 30043 (-)
Gene ID: Rep_3486_c_8_32
Type: TC
Location: 30398 - 31753 (+)
Gene ID: Rep_3486_c_8_33
Type: TC
Location: 31792 - 32436 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
FB2012
→
Species
FB2012 sp900752625

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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