Cluster: Rep_3481_CGC11
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_3481
- CGC Family ID: CGCFAM_00317
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3481_c_20 | Rep_3481_c_20_1 | 32 | 721 | - | 3.A.2.1.5 |
| NULL(UNKNOWN) | Rep_3481_c_20 | Rep_3481_c_20_2 | 923 | 1264 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3481_c_20 | Rep_3481_c_20_3 | 1283 | 2218 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | Rep_3481_c_20 | Rep_3481_c_20_4 | 2215 | 3357 | - | GT4 |
| CAZyme | Rep_3481_c_20 | Rep_3481_c_20_5 | 3354 | 4499 | - | GT4 |
| pfam | Rep_3481_c_20 | Rep_3481_c_20_6 | 4558 | 5595 | - | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| pfam | Rep_3481_c_20 | Rep_3481_c_20_7 | 5623 | 6687 | - | NTP_transferase | NTP_transf_3 | ManC_GMP_beta-helix |
| TC | Rep_3481_c_20 | Rep_3481_c_20_8 | 6684 | 8069 | - | 9.B.18.1.3 |
| STP | Rep_3481_c_20 | Rep_3481_c_20_9 | 8286 | 9062 | - | Response_reg | Spo0A_C |
| NULL(UNKNOWN) | Rep_3481_c_20 | Rep_3481_c_20_10 | 9319 | 10629 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3481_c_20 | Rep_3481_c_20_11 | 10633 | 12348 | - | GH26 |
| CAZyme | Rep_3481_c_20 | Rep_3481_c_20_12 | 12361 | 14670 | - | GH95 |
Gene ID: Rep_3481_c_20_1
Type: TC
Location: 32 - 721 (-)
Type: TC
Location: 32 - 721 (-)
Gene ID: Rep_3481_c_20_2
Type:
Location: 923 - 1264 (-)
Type:
Location: 923 - 1264 (-)
Gene ID: Rep_3481_c_20_3
Type: pfam
Location: 1283 - 2218 (-)
Type: pfam
Location: 1283 - 2218 (-)
Gene ID: Rep_3481_c_20_4
Type: CAZyme
Location: 2215 - 3357 (-)
Type: CAZyme
Location: 2215 - 3357 (-)
Gene ID: Rep_3481_c_20_5
Type: CAZyme
Location: 3354 - 4499 (-)
Type: CAZyme
Location: 3354 - 4499 (-)
Gene ID: Rep_3481_c_20_6
Type: pfam
Location: 4558 - 5595 (-)
Type: pfam
Location: 4558 - 5595 (-)
Gene ID: Rep_3481_c_20_7
Type: pfam
Location: 5623 - 6687 (-)
Type: pfam
Location: 5623 - 6687 (-)
Gene ID: Rep_3481_c_20_8
Type: TC
Location: 6684 - 8069 (-)
Type: TC
Location: 6684 - 8069 (-)
Gene ID: Rep_3481_c_20_9
Type: STP
Location: 8286 - 9062 (-)
Type: STP
Location: 8286 - 9062 (-)
Gene ID: Rep_3481_c_20_10
Type:
Location: 9319 - 10629 (-)
Type:
Location: 9319 - 10629 (-)
Gene ID: Rep_3481_c_20_11
Type: CAZyme
Location: 10633 - 12348 (-)
Type: CAZyme
Location: 10633 - 12348 (-)
Gene ID: Rep_3481_c_20_12
Type: CAZyme
Location: 12361 - 14670 (-)
Type: CAZyme
Location: 12361 - 14670 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp900545125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.